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When parsing http://edamontology.org/format_3244 in BioPortal, the comment is concatenated to the definition. See source below, and compare with BioPortal "definition" field. I think this is not an ED…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/jaspershen/MetCleaning
Confirm the following by e…
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I thought Crux could read MS2 data that was gzipped, but when I give Comet a gzipped input file, it simply runs to completion and reports no output. It seems like it should report some sort of error …
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While running the new `synpater2` pipeline we recognized a speed reduction in creating in-memory `Spectrum2` objects. This is a huge problem for creating >100000 spectra (which took ages but is now at…
sgibb updated
7 years ago
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`mzR` is [crashing](http://www.bioconductor.org/checkResults/3.3/bioc-LATEST/ProteomicsAnnotationHubData/moscato2-buildsrc.html) on windows when the `pwiz` back-end is used. The code works fine on oth…
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This may be an issue rather than a bug.
I am running R 3.3.1 on a 24 core 64 bit Windows virtual machine.
I don't know whether the issue is the Windows build or virtualization, but I don't get multi…
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What do you imagine are the first three steps in your class project? Feel free to ask clarifying question in class or using issues..
sr320 updated
8 years ago
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In `pickPeaks` you find the following lines to test for centroided mode:
[functions-Spectrum.R:395](https://github.com/lgatto/MSnbase/blob/a942daa309c5f65180556c8d5399fe33b2e1fd68/R/functions-Spectrum…
sgibb updated
8 years ago
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Get a definition of nmrML into EDAM, maybe based on PSI's mzML definition:
``` xml
mzML
mzML is the successor and unifier of the mzData for…
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Recently, a [bug had been fixed in pwiz](https://sourceforge.net/p/proteowizard/mailman/message/35440534/) that now allows to correctly refer to an MS3 precursor. This is an essential feature for down…