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(base) PS D:\workspace\nnUNet> nnUNetv2_predict.exe -i nnUNet_raw/Dataset001_BrainTumour/imagesTs -o out_results -d 001 -c 3d_fullres -f all -chk checkpoint_
best.pth --save_probabilities
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When I use colab to run the cardiac segmentation project, it shows:
WARNING! Cannot run postprocessing because the postprocessing file is missing. Make sure to run consolidate_folds in the output fo…
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Hi!
I've been using nnUNet for a while now and everything was running completely fine! However, during training I suddenly got the errors (included in the image). I didn't change anything to the d…
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Thanks for this great work.
I want to ask about the pseudo tumor label. Does it contains any tumor such as colon cancer and stomach cancer, or just the cancer in the four organs?
And I am also w…
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Hi, I'm having some trouble running nnUNet on the Synapse BCV dataset. I run it on a anaconda powershell prompt, and this error occurs the same for both 2D and 3D training. The version I am currently …
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Hi,
Thank you for all the work on nnUNet. I have a question regarding changing the training batch size through the nnUNetTrainer.
I changed the batch size in the nnUNetTrainer class by setting …
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Hello, I've recently encountered a problem. When I run something such as `nnUNetv2_train 403 3d_fullres all --npz` , the initial current learning rate that displays no longer matches what I have in ..…
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Thanks for your excellent work. I find an error if I run nnunetv2_train with torch.compile enabled:
```
torch._dynamo.exc.BackendCompilerFailed: backend='inductor' raised:
AssertionError: libcuda.s…
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Hey, you can ignore these prompts. They have been removed in nnunet v2 because they are only confusing people. The way you did it is correct: just add these images to your training set w…
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Hi, thank you for this great work! I would like to ask you some questions about how to reproduce, if I only want to split the BTCV data set, what should I change, and where in the code should I change…