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### Expected behavior
MUSR data should osciallte around a value of zero for the asymmetry.
### Actual behavior
There is a non-zero offset in the data
### Steps to reproduce the behavior
Loa…
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@achevali commented on [Wed Feb 15 2017](https://github.com/broadinstitute/gatk-protected/issues/902)
It should state that the wrong file was given instead of trying to use it.
```12:11:34.836 INF…
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Specific issue: `TumorWholeGenomeCoverage` does not appear to start after `TumorCalculateTargetCoverage` has completed successfully.
- local backend
- server mode
- call caching is enabled
- dev snaps…
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- local backend with 16 cores and 104GB RAM
- cromwell-0.21-6da2d10-SNAPSHOT.jar (incl. file path hashing and local backend throttling)
Whether the job is a cache hit or not, it seems that the cromw…
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We would insert a normalization step (right after pcov?) to normalize out the size of the target.
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Proportional coverage is trivial to compute and can be done on the fly if really necessary (e.g., for plotting? When else do we need it?). Only allowing raw read counts will make the interface for t…
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Trying to run a wdl script with cromwell 0.19 jar. I've been getting this error periodically, but as I make changes to the wdl, these disappear or come back. Unfortunately, this one is back and I ca…
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The optimize functions do not have any way to set parameter limits, for example stating p[0]>=0 to prevent the fitting from attempting negative values. This SEVERALLY limits the usefulness of the pack…
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Is there anyway of choosing to run only the analyse part of the experiment? It would be useful to be able to rerun just the analyse part sometimes to tweak fitting parameters and to have the option of…