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Hello, I encounter this error when trying to generate the topology:
```
OpenMMException Traceback (most recent call last)
in ()
67
68 # solvate it in 0.15 …
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Hi,
I am new to using the protein viewer plugin in the vscode. I think it would be cool if I could use it on remote-connected Windows so that I don't need to download it to my local host. However, …
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Hello,
I am encountering an issue when using molpc2 to predict the structure of large proteins with known stoichiometry information. For example, when I try to predict the structure of 1A8R (or 5BSE)…
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I created my own chromsize.tsv:
it looks like
Chromosome Start End
0 chr1 0 248956422
1 chr2 0 242193529
2 chr3 0 198295559
3 chr4 0 19…
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Hi, how could i generate the lignad.params file if there are multiple ligands for my target protein?
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They seem to be missing.
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- [x] The process of adding nodes is slow, we should figure out what part is slow (i.e. adding edges, getting current positions etc). There might also be a built-in delay in the addCyNodes function. -…
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I am wondering if the PSI:MI-tab for interactions can be
ingested into the RO since it describes relationships between
two molecular entities. If not, are there similar/equivalent terms.
Similarl…
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A minor feature request for multiple covalent bonds between a single protein and a single ligand would be wonderful, if possible.
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Hi! Is the PISA API working?
I currently have a series of unp_ids, such as ['Q5VTD9', 'Q6PL24', 'Q9UKM9', 'Q9H0A3', 'Q9P2N6', 'P21127', 'Q8TD94', 'Q86SH2', 'Q9BYR3', 'Q99856']. How can I retrieve fo…