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Similar to use of figaro which we don't actually (yet), we can now access the raw quality data that you see in the fancy plots.
I split dada2's [plotQualityProfile](https://github.com/benjjneb/da…
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Dear all,
I sequenced the v3v4 region of 16s. I have some sequences which are shorter than 400 bp after merging. Would you recommend to remove those short sequences and at which length would you ma…
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As I explain to other researchers the merits of DADA2, I am always at a loss as to what to call the final sequences from the DADA2 results. I usually just say "OTU", because it is easy to understand, …
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Programs in the [EMBOSS package](http://emboss.open-bio.org/) use a concept known as *Uniform Sequence Addresses* (*USAs*) to refer to biological sequences from different sources (plain files, databas…
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Hello,
I am using RagTag to anchor hifiasm contigs to a reference assembly of another genotype in the same plant species. I just wanted to let you know that I get two types of errors in the same chro…
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**Submitting author:** @nishanmudalige (Nishan Mudalige)
**Repository:** https://github.com/nishanmudalige/BOLD.R
**Version:** 0.4.0
**Editor:** Pending
**Reviewer:** Pending
**Managing EiC:** Kristen…
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**What is the SO term name and accession?**
cis_regulatory_module (SO:0000727)
DNA_loop (SO:0002307)
DNA_loop_anchor (SO:0002308)
epigenetically_modified_region (SO:0001720)
accessible_DNA_region…
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Talking about this with @andrewkern and @vsbuffalo. Currently, the "Chromosomal inversion" recipe of section 14.4 has a recombination callback that looks like this:
```
recombination() {
if (gen…
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Any suggestions how to register this as simple allele/canonical allele level?
http://www.ncbi.nlm.nih.gov/clinvar/variation/8152/
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```bash
(vamb_env) -bash-4.1$ vamb --fasta mage_output/M-1507-133.A/intermediate/assembly_output/scaffolds.fasta --jgi coverage_output/coverage_metabat2.tsv --outdir vamb_output
Traceback (most rec…