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Your case study represents a useful and interesting example of reproducibility in applied scientific research, and we value this contribution relating to ActivePages very much. The Narrative is extre…
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Thanks for squashing the bug I mentioned last week with "analysis_funcs". No problems there now.
New error. When I go to "General Conf" and click "Coalescent simulator?" checkbox I get:
Warning: …
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I'm reformatting how loci are specified for fastsimcoal, and I want to clarify/remember a few things:
1) Are we allowing simulation of more than one chromosome? If so, how are we specifying recombina…
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Once we have the long description settled (#2), I'll move on to sculpting the short description out of it. When we have a first draft we can use this thread as a focal point for criticism.
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Question 1: how is the "Select Simulation Root Directory" on tab 1 different from the "Subdirectory for actual simulation" on tab 3?
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Hi All,
Error in if (nrep < 1) keep.null
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Running on linux-64 (Ubuntu 15.04) using AMD OpenCL and OpenMM master, FAHBench detects NaNs in the positions, but hangs while throwing an exception.
I built in debug mode with the some modifications…
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I found that I had to clone strataG from Eric's github repository and build locally to make sure that skeleSim would build. The current CRAN version does not export something...
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Trying to run test md -
config.cfg file contents:
# Length of simulation and platform
nmoves = 1000
ncycles = 1
# platform = OpenCL
# Input files
topfile = solvated.parm7
crdfile = solvated.rst7
…
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Hi everybody,
I'm new in HTMD world. In these days I'm starting to spend my free time looking to understand it deeply.
I think that the parametrization module could be very useful, so I have tried it…