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I'm trying to analyze a set of Paired FastQ files with dada2 in R. In my analysis I was doing before I realized that the raw reads still had their primers attached. So I went through the ITS workflow …
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This task was suggested by @turbomam, who said all the hyperlinks are defined in Markdown files in the `docs` directory.
I plan to use https://github.com/lycheeverse/lychee to check the hyperlinks.…
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I think this section is very good and informative, but it needs a few updates. See below.
Section: “Accessing the original archived data”
Point 2: The project now shows 15 instead of 14 sub-proje…
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### Ask away!
Hello,
I downloaded human Nanopore data from NCBI. This MinION data is 79.72 Gb.
https://www.ncbi.nlm.nih.gov/sra?linkname=bioproject_sra_all&from_uid=553438
I searched this we…
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Hi,
I downloaded sra files with download . files () using file paths from SraRunInfo.csv in RStudio(linux),
When I run fast-dump for srr files I get the error: column not found while opening table w…
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Hi,
I encountered an error when prefetching the sample named SRR14035804 in a docker container using an AWS EC2 instance in us-east-1.
The .sra file of the run can be correctly downloaded. But w…
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If piping the fastq file in through stdin (becase gzip isn't supported #4), and also specifying to keep removed spots (`-r`) I get the following error
```
Traceback (most recent call last):
Fil…
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Hi!
I am using _fadso_ to downsample FASTQ data([SRR7890824](https://www.ncbi.nlm.nih.gov/sra/?term=SRR7890824), about 200G), but I am encountering the following error:
`./fadso single -r 12345 -k 1…
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We are using [HIVE2](https://hive2.biochemistry.gwu.edu/dna.cgi?cmd=login&follow=home).
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Hello,
I've made multiple attempts to download and decrypt a set of files from dbGaP using IBM Aspera. On the first attempt, the connection was interrupted and the download was incomplete. On the s…