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At the research centre where I'm based, our Systems team won't allow Docker, but do have Singularity available. I notice that the latest version of bgruening/galaxy-stable claims to support Singulari…
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```
# 1st cell
import nglview as nv
view = nv.show_file('../ngl/data/1crn_apbs_pot.dx.gz')
view
# 2nd cell
view
```
The current implementation is to store a series of commands in view, i…
hainm updated
7 years ago
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Using our app which includes NGL, we let users type in pdb codes and sometimes these are just plain wrong / don't exist - on these occasions we get errors in the console like below, as NetworkStreamer…
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Hey guys, I just did a fresh install of htmd, and I had trouble getting nglview to work. The magic fix was this command:
```
jupyter-nbextension enable nglview --py --sys-prefix
```
Which was …
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Assuming `NGL` can be deserialized.
Backend
```python
view._ngl_deserialize = True
# view._serialized_stage
```
-> This will trigger `this.model.set(NGL.deserialize(this.model.stage), "_se…
hainm updated
7 years ago
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When initializing with npm one can have an (optional) scope along side the command.
e.g. running `npm init -f --scope myScope` in a directory `MyPackageName` leads then to a package name `@myScope/M…
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nglview 1.02b
ipywidgets 7.0.1
```python
iwd = nglview.show_structure_file(os.path.abs('file1.pdb'))
iwd
```
works, however:
```python
iwd.add_component(os.path.abspath('file1.pdb'))
iwd
`…
gph82 updated
7 years ago
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Hi, I'm testing a script on two Macs, and despite apparently identical setup, the widget does not show up on only one of them.
Javascript control panel shows this.
`[Error] Could not instantiate w…
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looks like current npm package does not support angular 4. ng-lightning@1.3.0 wants @angular/core@>=2.0.0
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hi,
nglview is using NGL 0.10.4. The loaded structure stand for while and then auto-spinning.
I guess I hit some unknown keys that triggered that. Is it your intention or a bug? cheers.
hainm updated
7 years ago