-
## Idea
I want to formalize the format for storing HDF5 Trajectories on disk, and provide some kind of a "contract" that our code can say that it implements. It makes sense for the writers of traject…
-
I am using the docker version of the webserver, and I have successfully built and searched the example uniclust DB and another custom protein DB.
I have also built a DNA DB, but searching it produces…
-
I am trying to test lightdock performance on my case. I have a successful run with 200 swarms with 100 glowworms (step 100) in each swarm. Now I want to another set running with 500 swarms and 200 glo…
qiuzy updated
4 years ago
-
Hi,
I am trying to analyze the proteomics data from tims tof pro.
I have used *.mgf files to run in MS fragger (both with fragpipe and proteome discoverer node)
Both of them failed to read the …
-
I have copied the error that I am repeatedly facing with MSfragger -glyco
System OS: Windows 10, Architecture: AMD64
Java Info: 1.8.0_251, Java HotSpot(TM) 64-Bit Server VM, Oracle Corporation
…
-
Hi all,
I've deployed the latest version of jacky. Here is the link for everyone to test it:
http://jacky-env-01.ehym3crjpy.eu-west-2.elasticbeanstalk.com/
I initially had problems with the stats…
-
# Describe the problem
I'm trying to run a single mzML file converted from a thermo .raw using MSConvert. The MSFragger part of the workflow seems to execute OK, but ProteinProphet generates an err…
-
The docs for `pl-string-input` have inconsistent examples about what the correct answer parameter should be: https://github.com/PrairieLearn/PrairieLearn/blob/master/doc/elements.md#customizations-5
…
-
This seems like the logical thing to do; its basic enough that its not too far down, and provides an interesting way to make the unique crops crafting slightly easier.
While I'm here, could you als…
-
In addition to the MSA View, there would be a new view in which Pfam domain and signature hits for each sequence would be graphically represented as GIFs. The GIFs lengths and positions would be prop…