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At the moment, we cannot create an individual using the command line where we relate it to a couple of samples and want to provide annotation sets. The subcommand _annotation-sets-create_ is deprecat…
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This is maybe a piece of, or duplicate of, or related to, or... issues #152 and #246 and also PRs #174, #296, and #337. This issue is being created as a clear place to discuss addition of an explici…
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have a cli with subcommands that could set up certain project aspects like:
- init a library project (setup rollup etc)
- add my prettier config
- add my eslint config
- whatever else
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It would be great to be able to export the app with all subcommands, options and args to JSON (or something similar) so documentation tools can then pick up on it and make documentation pages.
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I have `GNUPGHOME` set to a directory under `XDG_CONFIG_HOME`. However, any of the keybase pgp subcommands are still expecting/recreating `~/.gnupg` rather than respecting `GNUPGHOME`.
```
$ keybase …
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For example the add commands like 5 other subcommands in the same section without explaining in more detail what valid parameters are.
Would suggest splitting this up into 5 subsections.
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The documentation for `argparse` [[ref](https://docs.python.org/3/library/argparse.html#argparse.ArgumentParser.add_subparsers)] suggests using `set_defaults` for handling subcommands, but I'm not sur…
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I can't find any reference for creating subcommands. E.g.
```
app command subcmd1 --help
app command subcmd2 --help
```
As far as I can tell clikit seems to be [supporting](https://github.com/s…
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Here is an assorted list of tools for which completions might be of interest to some users.
- [ ] annovar
- [ ] bamstats
- [ ] bcftools
- [ ] beagle
- [ ] BigWig
- [ ] bismark
- [ ] callisto
…
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I made a visual representation of amass subcommands for new users. I am also a new amass user. Therefore, the presentation may contain technical and logical mistakes. If you have any corrections and s…