-
Hi,
I don't know why but my complexheatmaps get stuck after I am done plotting one heatmap and plot the next heatmap it takes forever to finish. I was wondering if there is a neat trick to overcome…
-
https://mp.weixin.qq.com/s/3mZZ_umJT_a7cL3uJtMFQg
ixxmu updated
2 years ago
-
https://mp.weixin.qq.com/s/OPDi50D-7BHCJx5MhIFfuw
ixxmu updated
2 years ago
-
https://mp.weixin.qq.com/s/OPDi50D-7BHCJx5MhIFfuw
ixxmu updated
2 years ago
-
Hi,
Thank you for the great tool!
I ran infercnv successfully on an integrated count matrix for multiple individuals (integrated using Seurat). The final CNV plot (including cells of all samples…
-
Hi @hclimente ,
working with spada i do like the results. But since you said in a previous issue that the current version of spada is a '_complete re-implementation of the software used in the paper…
-
https://mp.weixin.qq.com/s/pGyn2eO2YFGjLHsd41dt6w
ixxmu updated
2 years ago
-
Hi, I have an RNA count matrix for a few samples generated by cell ranger, turned into a Seurat object.
I'm running inferCNV on each sample separately. For a very small bad QC test sample with about…
-
In SPATA2, I try to transform `seurat object` to `spata object` by the function transformSeuratToSpata()，but it has error：
> Error in h(simpleError(msg, call)) :
error in evaluating the argume…
-
Hi!
I'd like to use infercnv to distinguish between malignant and nonmalignant cells.Code I used in docker mirror are as follows :
```
options(error = function() traceback(2))
library("infercnv…