issues
search
theMILOlab
/
SPATA2
A Toolbox for Spatial Transcriptomics Analysis
https://themilolab.github.io/SPATA2/
108
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Hull improvements and other fixes
#203
kueckelj
closed
3 days ago
0
plotSasLineplot problem
#202
seokjune-99
opened
6 days ago
2
ERROR asSPATA2
#201
carlosccfraga
opened
1 week ago
1
Implement trajectory analysis on spatial data without images
#200
yuGithuuub
opened
1 week ago
1
Advice on using SPATA2 for Xenium data
#199
HarryZhang1224
opened
2 weeks ago
8
Spatially-weighted correlation analysis from Ravi et al., 2022
#198
p-lombard
opened
2 weeks ago
0
A issue about createSpatialTrajectories with Draw plot
#197
wuxiangning
opened
3 weeks ago
1
Update versioning
#196
kueckelj
closed
3 weeks ago
0
bspace fix
#195
kueckelj
closed
3 weeks ago
0
An error in visualizing the SPATA2 file, after directly importing the Seurat RDS file using the asSPATA2 function
#194
wuxiangning
opened
3 weeks ago
13
runBayesSpaceClustering
#193
schak-ukf
opened
4 weeks ago
9
The coordinates don't match with the image after running asSPATA2()
#192
renyzh5-2
opened
4 weeks ago
2
v3.1.1
#191
kueckelj
closed
1 month ago
0
Image filp？
#190
FelixZ95
closed
1 month ago
4
asSPATA2 fix
#189
simonmfr
closed
1 month ago
0
Error in runCNV
#188
Shinaipeng
closed
1 month ago
2
doc fixes
#187
kueckelj
closed
1 month ago
0
Installation problem of SPATA2 package
#186
meiweijiucai
opened
1 month ago
1
v3.1.0
#185
kueckelj
closed
1 month ago
0
website update2
#184
kueckelj
closed
1 month ago
0
v3.1.0
#183
kueckelj
closed
1 month ago
0
website update
#182
kueckelj
closed
1 month ago
0
Bug fixes | Adding plotSasDensityplot
#181
simonmfr
closed
1 month ago
0
improved createSpatialSegmentation()
#180
kueckelj
closed
1 month ago
0
createSpatialSegmentation
#179
kueckelj
closed
1 month ago
0
fix issue #176
#178
kueckelj
closed
1 month ago
0
How to subset cell types within a spatial annotation
#177
SavKilPat
opened
1 month ago
2
how to get histology in SPATA2
#176
wuxiangning
opened
1 month ago
17
Issue 174
#175
kueckelj
closed
2 months ago
0
Error in plotSasLineplot()
#174
A-Oncol
closed
1 month ago
5
Error in asSPATA2()
#173
khpark00
opened
2 months ago
7
Issue 171
#172
kueckelj
closed
2 months ago
0
Error code
#171
Cong1975
opened
2 months ago
1
Error using asSPATA2: 'Invalid spatial measure input at position 1'
#170
RookieA1
opened
2 months ago
7
Improvements for MERFISH SAS and plotting
#169
simonmfr
closed
2 months ago
0
issue with Visium V2: converting from adata to SPATA2
#168
GUOYF0412
opened
2 months ago
2
use_scattermore documentation
#167
simonmfr
closed
2 months ago
1
Update l.R
#166
kueckelj
closed
2 months ago
0
Spatial annotation visualization mismatch
#165
964612858j5
closed
2 months ago
6
loadExampleObject: Error in visium_spots$VisiumSmall[, c("barcode", "row", "col")] :
#163
964612858j5
closed
2 months ago
5
“id” not defined in STS tutorial
#162
simonmfr
closed
2 months ago
0
v3.0.3
#161
kueckelj
closed
2 months ago
0
spatialTrajectoryScreening Error - discrepancy between names and columns
#160
SavKilPat
opened
3 months ago
14
v3.0.2
#159
kueckelj
closed
3 months ago
0
Error in .subscript.2ary(x, , j, drop = TRUE) : subscript out of bounds
#158
hlcxq1223
closed
3 months ago
4
Error in normalizeCounts for VisiumHD SPATA2 object
#157
vfincke
closed
3 months ago
2
An error was reported when I installed it
#156
dfgao
opened
3 months ago
11
v3.0.1
#155
kueckelj
closed
3 months ago
0
Error in make_pixel_dataframe(.) : could not find function "make_pixel_dataframe"
#154
alosdiallo
closed
2 months ago
11
website upload
#153
kueckelj
closed
3 months ago
0
Next