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theMILOlab
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SPATA2
A Toolbox for Spatial Gene Expression Analysis
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plotTrajectoryLineplot empy plot
#127
MatteoRiva95
opened
1 week ago
0
Dev
#126
kueckelj
closed
1 week ago
0
issue with VisiumV2 class object
#125
thdk13
opened
1 month ago
6
Adjust pipeline for MERFISH data
#124
simonmfr
closed
1 month ago
0
Dev
#123
kueckelj
closed
1 month ago
0
misc
#122
kueckelj
closed
1 month ago
0
Remove anndata package from dependencies
#121
simonmfr
closed
1 month ago
0
take down SPATA 1 website
#120
simonmfr
opened
1 month ago
0
revise documentation
#119
kueckelj
opened
1 month ago
0
rename binwidth to resolution
#118
simonmfr
opened
1 month ago
0
test
#117
kueckelj
closed
1 month ago
0
Can it works on Slide-seq data?
#116
ShaowenJ
opened
1 month ago
0
update show() functions
#115
simonmfr
closed
1 month ago
0
tissueOutlineIdentified(object) is not TRUE
#114
MatteoRiva95
opened
1 month ago
5
QC filter SPATA2 object / SPATA2 to Seurat
#113
BaluPai
opened
1 month ago
0
Error in purrr::map(.x = seq_along(id), .f = function(i) { : Caused by error in `map_df()`: ! could not find function "map_df"
#112
cubense
opened
2 months ago
0
Spatially weighted regression analysis
#111
yeswzc
opened
2 months ago
0
Adding manual trajectory object based on the metadata
#110
Qirongmao97
opened
2 months ago
1
Error in runAutoencoderDenoising
#109
p-lombard
opened
2 months ago
2
gdata remains empty after asSPATA2 conversion
#108
deprodas
closed
2 months ago
3
plotSurface(object_t269, color_by = "Seurat", pt_clrp = "jama")
#107
healthgreat
closed
2 months ago
1
Error in getActiveMatrixName(object, verbose = FALSE)
#106
YingXu-FDU
opened
3 months ago
2
Subject: Inquiry on SPATA2 Package Update Release
#105
healthgreat
closed
2 months ago
1
`Error in (function (cl, name, valueClass) : 'id' is not a slot in the 'Image' class` in example dataset
#104
1667857557
opened
4 months ago
0
asSeurat fix + Seurat v5 compatibility
#103
simonmfr
closed
4 months ago
0
platform compatibility - seurat
#102
rhlgyb
opened
4 months ago
11
Function asSeurat() gives error in confuns package
#101
emcramer
opened
5 months ago
3
Error runBayesSpaceClustering
#100
juliach2
closed
4 months ago
3
Unable to load any objects on SPATA2
#99
ssrinivasan2
opened
5 months ago
7
initiateSpataObject_10X Error
#98
BaluPai
closed
3 months ago
10
What is the difference between SPATA2 and SPATA?
#97
weichendan
closed
5 months ago
1
Error in give_feedback(msg = msg, verbose = verbose, fdb.fn = fdb.fn, :
#96
acazelles
opened
5 months ago
12
Seurat v5 compatibility
#95
ayushbharati
closed
5 months ago
8
Seurat V5 compatibility issue
#94
AMAwatermelon
closed
3 months ago
5
[SPATA2] tutorial for annotation upload and subsequent infercnv run
#93
jpark27
opened
8 months ago
0
minor updates to runSDEA and findSDEGS
#92
simonmfr
closed
6 months ago
0
updated rotateImage
#91
simonmfr
closed
8 months ago
1
minor bug fixes
#90
simonmfr
closed
9 months ago
0
PlotSurface smoothing works for individual genes, but not gene sets
#89
wlwang20
opened
9 months ago
3
Add plot_model_comparison_dotplot()
#88
simonmfr
closed
9 months ago
0
Lost some info after converting to spata2 object
#87
phoebee-h
opened
10 months ago
6
Converting giotto object to SPATA2
#86
archana433
closed
8 months ago
3
update deprecated functions
#85
simonmfr
closed
11 months ago
0
Problems with transformSeuratToSpata
#84
llllkn
closed
8 months ago
2
runAutoEncoderDenoising "no applicable method for 'compile'" error.
#83
wlwang20
closed
9 months ago
1
What is the input image for initiateSpataObject_CountMtr?
#82
yeswzc
closed
11 months ago
8
ggplot2 error with ias_layer_bins
#81
dst53
closed
12 months ago
4
"Invalid pointer" error when installing v2.0.0 or above
#80
Tang-YH
closed
1 year ago
0
Updated asSPATA2() for Anndata and Giotto
#79
simonmfr
closed
1 year ago
0
[Feature request] Additional image coregistration
#78
bhuvicp
opened
1 year ago
0
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