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The plot is created, but I have no idea on the error.
I have a DEG set produced by DeSeq2.
I get the sorted ranked with ENSEMBL names (hg38) as:
```
head(geneListDF)
ENSG00000256377 ENSG000001597…
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Hello,
First of all, thank you very much for developing panelcn.mops. It is a really helpful tool.
I am having a problem when plotting all exons of a candidate gene from a panel. The problem is …
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Hi Guangchuang,
I found `enrichKEGG` returned different results in different R sessions. It's strange, and I don't know why.
Test 1, no enrichment was found:
```R
> head(DE_genes2)
…
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Hi Stuart,
Hope things are going well & I'm still finding this to be such a useful package.
I've come across a problem with `join_overlap_left()` if the right ranges contain a `CharacterList` co…
smped updated
2 years ago
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Hello! Thank you for all your work!
I have a question about one the HaplotypR functions.
I am working on MiSeq data with the HaplotypR package. I have 35 samples with five P. falciparum markers: …
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Hi,
When I run the srnadiffExp() I got warning message as below:
```
.. 1141080 elements found...
... Annotation step done.
Constructing object...
... done.
Warning message:
In rcpp_normaliz…
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Hi!
I want to use your tool in my analysis and everything went perfect till calculating differential usage of genes and later steps. Error that i faced as follow :
`error in the command '`[.dat…
KateK updated
4 years ago
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I am receiving this error when running enrichKEGG():
> Error in download.KEGG.Path(species) :
> Failed to download KEGG data. Wrong 'species' or the network is unreachable. The 'species' should…
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I've run into issues with displaying a simple plotly output in shiny when I install the latest tidyverse (1.3.2). The issue does not appear with tidyverse 1.3.1, or if I do not install tidyverse.
I…
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Dear Group,
i would like to discuss and mention a specific problem that i have encoutered regarding the download/preprocess of specific RNA-Seq data from TCGAbiolinks:
# for the TCGA-COAD RNA-Se…