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estepi / ASpli

Analysis of alternative splicing using RNAseq

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Getting gene names from genome TxDb using T2T genome

#27 katiebegg opened 1 year ago
0
jCounts function NA error

#26 rfarouni opened 1 year ago
1
Alternative first exon undetected

#25 IsabelGam opened 2 years ago
2
Error in xj[i] : invalid subscript type 'list' when running jDUreport

#24 bertapozzi opened 2 years ago
0
Which alignment method and indexing options are suitable to use in ASPli?

#23 hkarakurt8742 opened 2 years ago
1
Error in gbCounts and using the matrices in external tools

#22 hkarakurt closed 2 years ago
2
BAI Index file: Error in value[[3L]](cond) : 'Realloc' could not re-allocate memory (125829120 bytes)

#21 vandesm opened 2 years ago
1
All NAs using ASpli for all splicing events

#20 OnkarMulay closed 3 years ago
2
ASpli work for low read depth

#19 OnkarMulay closed 3 years ago
3
jCounts error

#18 vinothkr11 opened 3 years ago
2
exportIntegratedSignals returns empty Gene View output

#17 Estherrr1997 opened 3 years ago
27
error with jCounts

#16 Arkosen opened 3 years ago
1
readCounts error

#15 ipatop opened 4 years ago
2
Issues on BinGenome

#14 lucaskbobadilla opened 4 years ago
12
Runtime estimation

#13 OlgaVT opened 4 years ago
7
The analysis of a single bam file

#12 OlgaVT opened 4 years ago
2
intron definiton

#11 qicaibiology opened 5 years ago
0
AsDiscover Error Message

#10 diegogarcia101 opened 5 years ago
1
algorithm on calculating intron retention

#9 qicaibiology opened 5 years ago
0
Wrong gene coordinates after bingenome

#8 qicaibiology opened 5 years ago
1
What does the logFC mean in 3 groups of samples

#7 qicaibiology opened 5 years ago
9
ASpli Installation error

#6 nishagove closed 5 years ago
1
error '`[.data.frame`(aDataframe, , match(row.names(targets), colnames(aDataframe)))': undefined columns selected

#5 KateK opened 5 years ago
26
Splicing event assignation

#4 bellenger-l opened 5 years ago
4
ERROR in avDbBin/gen.rdb

#3 fernandalpcosta opened 5 years ago
0
dots in chromosome names lead errors

#2 andreasleha opened 6 years ago
4
crash problem

#1 rson920 opened 6 years ago
18