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Hi, I have a somatic mutation filtered VCF file generated by GATK haplotypeCaller. I used that file to run MuPeXI on the web server, but got the following errors. Could you please let me know what's w…
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Hi Brad,
I'm trying to get the bcbio CWL implementation to work, but I keep running into the following error:
```
$ bcbio_vm.py cwl config/bcbio_cwl.yaml …
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https://www.synapse.org/#!Synapse:syn8507133/wiki/415976
This would show whether our workflow is reproducible.
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```
The error was: 'ascii' codec can't encode character u'\u2019' in position 9238: ordinal not in range(128)
```
From https://view.commonwl.org/workflows/github.com/MG-RAST/amplicon/blob/wilke/c…
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```
$ .virtualenv/bin/cwltool ndppp_prep_cal.cwl --msin data/L591513_SB000_uv.MS
.virtualenv/bin/cwltool 1.0.20171017195544
Resolved 'ndppp_prep_cal.cwl' to 'file:///home/gijs/prefactor-cwl/ndppp_p…
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The las parser getting 999.25 positive value and not -999.25 negative value
```
~Version Information
VERS. 2.0: CWLS log ASCII Standard -VERSION 2.0
WRAP. …
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Propose that the spec change to delete `ToolDescriptor.descriptor` since `ToolDescriptor.url` provides what is likely the canonical source for the contents of the ToolDescriptor. It would also cut dow…
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I try to read "~Well Information Block" but I cat get the value of DATA_TYPE column. I think that is a problem with the parser. May you help me?
```
~Version Information
VERS. 2…
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# Description
Building workflows with the Common Workflow Language.
There are several workflow tools for bioinformatics. Interoperability (the I in FAIR) is however often still a problem. In the…
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## User Stories
This section describes user stories that progressively build up a new GUI component for creating collections from "sample sheet" inputs. This would be a two step modal (avoiding the…