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Hello,
In the assemble step, I got an error that claimed "failed to generate unitigs".
In the direcroty /unitigging/4-unitigger, the file 'unitigger.err' give the error information: bogart: boga…
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I have run the latest Canu 1.4 on PacBio RSII reads (100X on a 500 Mb Genome)
After 48h the pipeline stops.
Here is the file canu.03.out in /canu-scripts.
Any idea of what is going wrong ?
Is t…
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I was assembling PacBio sequel sequencing data of soybean using canu with the default parameters on a local machining (144 threads and 1T memory). There are originally about 74× data, and after the …
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I'm trying to assemble a small region from the human genome to generate a consensus sequence. You can get the data here:
`samtools view -hb http://s3.amazonaws.com/nanopore-human-wgs/chr12.sorted.bam…
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trimReads failed with a segmentation fault, running commit fa3eede13415829dbb5c8abc769e73d18f3be658. From `canu-scripts/canu.07.out`:
```
-- Starting command on Sat May 13 03:37:44 2017 with 2291.…
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Hi all,
I'm trying to get `canu`'s grid mode working with my local SGE cluster. It only gets as far as mhap before each job fails with an error like this:
```
>cat ecoli-grid/correction/1-overl…
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So after 8 days' running, my Canu 1.4 got stuck in cor_wash_U_canu_test2-134 process. I checked /correction/2-correction/correction_outputs, there are 130 .fasta files with 0bp size .dump.success and …
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Hi, I'm trying to get canu up and running on my computing grid and am running into a bit of trouble. Sorry for the long post, I'm just trying to provide as much info as I can about my problem. I am te…
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Hi
I am getting the following errors while running canu:
```
ERROR: mhap overlapper requires java version at least 1.8.0; you have unknown (from 'java').
ERROR: 'java -showversion' reports:
E…
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Overlapper disse i betydning, slik at jeg kan slå sammen disse? Få treff. Diskriminering er knyttet til MSC70 62.41. @mittinatten