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Right now there are 155 database cross-references in UniProt:
- http://www.uniprot.org/database/
I want to discuss here
- [ ] which ones are essential
- [ ] a reasonable, flexible model for cross-ref…
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**when I run this code**
`python datasets/esm_embedding_preparation.py --protein_ligand_csv data/protein_ligand_example_csv.csv --out_file data/prepared_for_esm.fasta `
**I met this notice:**
```
…
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[ligands_at_site_349.csv](https://github.com/opensourceantibiotics/murligase/files/8647686/ligands_at_site_349.csv)
[ligands_at_site_373.csv](https://github.com/opensourceantibiotics/murligase/files/…
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Yo Tomas,
I need your library to write out the cif file ([PR](https://github.com/krab1k/ChargeFW2/pull/7) I am submitting).
I am creating a branch to do this, however, I think it would be good …
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Hi,
thanks for the code. How can I generate only peptides (smaller proteins) using transfer learning, can I finetune (valid_data) on peptides or is there some tweak etc? thanks!
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I've started to compile on the [wiki ](https://github.com/OpenSourceTB/OSTB_Series_3/wiki/The-Surrounding-Chemical-Space) an overview of compounds which are structurally related to _OSTB Series 3_. I …
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## Expected Behavior
Recently when we attempted to run AF2 on a complex but failed with following error message. We then test it with a notebook we ran before and same error was generated. Please hel…
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> I would love to be able to specify residues to design. Or full regions. If I have a structure, and I want to be able to (re)design a loop.
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Would it be possible to add a flag that limits the number of sequences returned by Jackhmmer/Nhmmer/Phmmer/Hmmsearch?
When HMMER is used in the context of protein structure prediction, we usually c…
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It would be great to have InChI or SMILES for core and coatings whenever applicable. This could allow nanoparticle similarity searching/read across (based on structural features and/or calculated prop…
ghost updated
7 years ago