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EddyRivasLab
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hmmer
HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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clarification: why is phmmer/jackhmmer better than blastp/psi-blast?
#327
JLSteenwyk
opened
2 days ago
0
Nhmmer running very slowly on certain sequences
#326
Augustin-Zidek
closed
1 week ago
4
Extracting sequences from nhmmer `--tblout`
#325
Euphrasiologist
opened
2 months ago
2
Updating HMMER
#324
eleanorwang
closed
3 months ago
0
Feature request: Limit the MSA depth in Jackhmmer/Nhmmer/Phmmer/Hmmsearch
#323
Augustin-Zidek
opened
3 months ago
12
Bug in hmmalign for multiple near-identical domains
#322
mhampton
closed
4 months ago
3
Hmmbuild returns different results for a3m and sto
#321
Augustin-Zidek
closed
3 months ago
6
Possible use-of-uninitialized-value found in nhmmer using MSAN
#320
Augustin-Zidek
closed
6 months ago
4
Nhmmer: different (2x smaller) e-values with fasta and hmmerdb
#319
Augustin-Zidek
closed
6 months ago
2
Using `int8_t` instead of `char` in `FM_METADATA`
#318
Augustin-Zidek
closed
6 months ago
4
Error messages about illegal command-line options appear to be getting cut off in some cases
#317
npcarter
closed
7 months ago
1
Parameters for building HMMs
#316
sanyalab
opened
7 months ago
2
Filter results of hmmsearch
#315
davidecrs
opened
8 months ago
0
hmmscan should just output tsv
#314
nhartwic
closed
8 months ago
6
Changelog Hmmer 3.4
#313
davidbio
closed
9 months ago
2
Returns error code when status is unset
#312
nawrockie
closed
10 months ago
1
read_asc{2,3}0hmm returning unset status
#311
nawrockie
closed
10 months ago
1
testsuite failures when built as library for infernal
#310
nawrockie
closed
10 months ago
2
Adds BLOSUM62 from easel/formats to testsuite/
#309
nawrockie
closed
10 months ago
1
`jackhmmer` returns "broken" homologs?
#308
ayaanhossain
closed
10 months ago
4
Fix `p7_tophits_Threshold` not resetting domain counts
#307
althonos
closed
12 months ago
2
hmmscan cannot utilize multiple threads.
#306
dianzhiyong
closed
11 months ago
2
Can you use Hmmer annotated files to get count table?
#305
lilyyycao
closed
11 months ago
6
Maximum sequence length HMMER can support
#304
perryXuu
closed
11 months ago
1
Is it possible to speed up phmmer searches with makehmmerdb ?
#303
gciaberi
closed
1 year ago
1
Target sequence length > 100K, over comparison pipeline limit
#302
Valentin-Bio
closed
1 year ago
2
errors with running tutorial
#301
MIndy123-cloud
closed
1 year ago
1
hmmer compatibility with the Apple M1 chips
#300
sunyj28
closed
11 months ago
1
hmmalign cannot open my sequence file even though it is located in my hmmer directory
#299
orspanish
closed
1 year ago
1
No description found on DESC line for hmm built using hmmbuild
#298
alex-hh
closed
1 year ago
2
select suitable sequence length
#297
AlisaGU
closed
1 year ago
1
domain can't be detected in the longer sequence
#296
AlisaGU
closed
1 year ago
6
standard realloc error when running hmmer in QIIME2
#295
Krupa-17
closed
1 year ago
1
nhmmer - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA.
#294
DJ-Champion
closed
1 year ago
3
Hmmbuild segmentation failure
#293
spiceeeheu
closed
1 year ago
1
--incdomT cannot control the hit significance
#292
ZhangDengwei
closed
1 year ago
3
Error: No MAXL field in model(s)
#291
TangShan99
closed
1 year ago
4
HMMER3 fails to detect a valid flanking hit.
#290
Thernn88
closed
1 year ago
5
Error in make 'undefined reference to `worker_process_shard''
#289
qussai96
closed
1 year ago
13
to (ali coord) and to (env coord) larger than qlen in domtableout
#288
ilyavs
closed
1 year ago
6
Problem installing hmmers
#287
edzeta
closed
1 year ago
3
Add CI based on Github Actions
#286
julien-faye
closed
1 year ago
6
Is AVX for hmmer3 still in process?
#285
Gy-Lu
closed
1 year ago
2
hmmemit: whoops, HMM is bad!
#284
chasemc
closed
1 year ago
5
HMMER re-install on Mac M1
#283
yunso123
closed
1 year ago
4
make error at develop branch
#282
wolf-Peng
closed
1 year ago
6
Unable to run create-profmark.c
#281
wolf-Peng
closed
1 year ago
3
Implements hmmdb_ranges option.
#280
horta
closed
1 year ago
2
hmmpgmd test error
#279
erick-dorlass
closed
1 year ago
6
A data race in jackhmmer v3.3
#278
Augustin-Zidek
closed
1 year ago
1
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