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EddyRivasLab
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hmmer
HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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Unable to run create-profmark.c
#281
wolf-Peng
closed
1 year ago
3
Implements hmmdb_ranges option.
#280
horta
closed
1 year ago
2
hmmpgmd test error
#279
erick-dorlass
closed
1 year ago
6
A data race in jackhmmer v3.3
#278
Augustin-Zidek
closed
1 year ago
1
A data race in nhmmer v3.3
#277
Augustin-Zidek
closed
1 year ago
2
Build failure on Linux ARM64
#276
martin-g
closed
2 years ago
5
What does hmmalign do when number of domains > 1?
#275
reubwn
closed
2 years ago
2
Fix "Invalid alphabet type" error in nhmmer - iss#271
#274
traviswheeler
closed
2 years ago
3
Add functions to clone a `P7_TOPHITS`
#273
althonos
closed
2 years ago
1
Adds -F option to hmmc2 to report hits as Stockholm format MSA for an…
#272
foreveremain
opened
2 years ago
5
Error: Invalid alphabet type in target / expected FASTA to start with >
#271
ptrebert
closed
2 years ago
10
hmmfetch: conflicting documentation
#270
nick-youngblut
closed
1 year ago
1
New splits for profmark
#269
spetti
closed
2 years ago
1
this is another test
#268
spetti
closed
2 years ago
1
New splits for profmark
#267
spetti
closed
2 years ago
1
[QUESTION] What is the meaning of 'profile' in 'profile-HMM'?
#266
a-a-k
closed
2 years ago
2
Clarification about e-values from hmmscan
#265
nattzy94
closed
1 year ago
1
Stop phmmer search after N significant hits have been found.
#264
davidjakubec
closed
2 years ago
4
Mingw build
#263
jones-gareth
opened
2 years ago
11
Support for M1 chip (ARM)
#262
jianshu93
closed
1 year ago
23
Code for Contig Assembly
#261
Prachikhattar
closed
2 years ago
1
Segmentation fault in hmmsearch when using a large HMM to search a large protein
#260
apcamargo
closed
1 year ago
5
Programming Question to reverse numbers in a range
#259
Prachikhattar
closed
2 years ago
1
Fix alimask out-of-range errors (iss #237)
#258
traviswheeler
closed
2 years ago
7
Segmentation fault during nhmmer search with binary (fm) database
#257
traviswheeler
closed
2 years ago
1
Make clean fails on develop branch
#256
npcarter
closed
2 years ago
1
autoconf failure -- autoconf 2.71
#255
traviswheeler
closed
2 years ago
1
hmmalign avoid flanking insertions
#254
btski
closed
1 year ago
4
Fix for large loss in hits using nhmmer w/ FM #172
#253
traviswheeler
closed
2 years ago
10
Fix for rare "Invalid alphabet type" nhmmer error
#252
traviswheeler
closed
3 years ago
3
Muscle alignment tool
#251
Prachikhattar
closed
2 years ago
1
How to merge profiles in different format?
#250
xiekunwhy
closed
2 years ago
1
hmmsearch/scan does not recognize *.hmm database
#249
B10inform
closed
2 years ago
1
custom alphabet support
#248
jsogin574
closed
2 years ago
6
hmmsearch force results for all query sequences
#247
gillichu
closed
3 years ago
2
unable to make hmmer for arm platform
#246
Yvonne-zyf0627
closed
2 years ago
2
Unable to Configure Hmmer
#245
Prachikhattar
closed
3 years ago
4
hmmsearch doesn't take long translated sequences as input
#244
fannyhb
closed
2 years ago
1
read a Dirichlet prior to replace default mixture Dirichlet in Hmmer-3.2.1
#243
qianfeng2
closed
3 years ago
2
Update SSE code to use `esl_sse_{left,right}shiftz_float`
#242
althonos
closed
3 years ago
4
Error in jackhmmer when using .gz compressed file as target database
#241
zhangnan0107
closed
2 years ago
4
Resource contention from independently run, unrelated hmmscan processes
#240
GabeAl
closed
2 years ago
4
Error: ���� when running in docker
#239
multimeric
opened
3 years ago
9
FATAL: J state unsupported
#238
GabeAl
closed
3 years ago
7
alimask crashes when given bounds that are outside the range of the alignment
#237
npcarter
closed
2 years ago
1
Fix `p7_hmmfile_WriteASCII` segfaulting on missing consensus sequences
#236
althonos
closed
3 years ago
1
[FEATURE REQUEST] Make tabular output files tab-delimited
#235
ivagljiva
closed
3 years ago
6
makehmmerdb fails with input/ouput error
#234
RivasLab
closed
2 years ago
2
Add platform-specific implementation for ARM using NEON
#233
althonos
closed
3 years ago
11
H3 arm
#232
npcarter
closed
3 years ago
1
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