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EddyRivasLab
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hmmer
HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
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Add platform-specific implementation for ARM using NEON
#233
althonos
closed
3 years ago
11
H3 arm
#232
npcarter
closed
3 years ago
1
Issue with small domains in HMMER3 fixed?
#231
michael-imbeault
closed
3 years ago
2
Add platform-specific implementation for ARM using NEON
#230
althonos
closed
3 years ago
1
the query name columns in the hmmsearch results file
#229
Wanli-HE
closed
3 years ago
1
Compatibility with apple silicon
#228
rob2go
closed
3 years ago
6
hmmer compatibility with the Apple M1 chips
#227
courtneystairs
closed
3 years ago
4
What are the CLUSTAL header requirements?
#226
RyanPendavingh
closed
3 years ago
1
How to save file reading/writing?
#225
Shen-Jing
closed
3 years ago
2
check targetdir existence before attempting to create it
#224
sjaenick
closed
3 years ago
1
Fix for nhmmer memory error - issue 213
#223
traviswheeler
closed
3 years ago
1
hmmsearch results in segfault in v3.3.1 for long sequences
#222
meren
closed
3 years ago
8
Format tag is '>seq2': unrecognized, file format problem in trying to open HMM file
#221
iab-bioinformatics
closed
3 years ago
1
Tests fail with @@ substitution error
#220
nemequ
closed
3 years ago
3
build warning for 3.3.2
#219
mathog
closed
3 years ago
3
Incomplete install?
#218
sjaenick
closed
3 years ago
2
fix some typos
#217
mr-c
closed
3 years ago
1
preserve user provided C{,PP}FLAGS
#216
mr-c
closed
3 years ago
1
Fix manpage extension
#215
mr-c
closed
3 years ago
2
configure hmmer3-arm on arm-platform
#214
X-WJ
closed
3 years ago
1
nhmmer requests negative memory when request exceeds maximum int size
#213
xonq
closed
3 years ago
19
distclean modification for config.log and config.status files
#212
nawrockie
closed
3 years ago
1
nhmmer fix error msg
#211
traviswheeler
closed
3 years ago
1
Error: Unable to guess alphabet for the FASTA-formattedquery file
#210
gy-chop
closed
3 years ago
2
Fix Makefile not using PIC_CFLAGS when building platform-specific code
#209
althonos
closed
4 years ago
1
New splitting algorithms in profmark
#208
spetti
closed
2 years ago
1
Alignment details in the tabular output
#207
gy-chop
closed
4 years ago
2
Uninitialised field in makehmmerdb
#206
Augustin-Zidek
closed
3 years ago
1
3.3.1 version: Target sequence length > 100K, over comparison pipeline limit.
#205
guilhemfaure
closed
3 years ago
1
add install-strip target
#204
sjaenick
closed
4 years ago
1
Too many open files
#203
gerbenvoshol
closed
4 years ago
1
hmmbuild no TC in hmm file
#202
tiramisutes
closed
4 years ago
2
Very long gap in an alignment, due to extreme mononlucleotide repeat in profile
#201
traviswheeler
opened
4 years ago
4
Fix Iss#195 - confusing error message for badly-formatted target database
#200
traviswheeler
closed
4 years ago
1
Fix for Isssue #198
#199
traviswheeler
closed
4 years ago
1
nhmmer model parameterization errors caused by highly repetitive sequence
#198
traviswheeler
closed
4 years ago
1
Iterative search with a MSA (or "resuming" jackhmmer)
#197
smsaladi
closed
4 years ago
2
Nhmmer runs without error on protein target database
#196
npcarter
closed
4 years ago
1
NHMMER gives unhelpful error when passed .embl file
#195
npcarter
closed
4 years ago
8
Fix for iss#171: guessing query file format
#194
traviswheeler
closed
4 years ago
46
nhmmer -A output alignment does not have the correct number of match states
#193
kad-ecoli
closed
4 years ago
12
Improve documentation of block reading in nhmmer
#192
traviswheeler
closed
4 years ago
1
Force trace to be Reuse()'d after numeric overflow in p7_Decoding()
#191
traviswheeler
closed
4 years ago
2
nhmmscan aliscoresout segfault
#190
bernt-matthias
closed
4 years ago
3
Hmmbuild parse error
#189
nadine-zakkak
closed
4 years ago
3
Converting hmmer bit-scores into posterior for domain hit
#188
thomas-a-neil
closed
4 years ago
2
Adding sequences to Pfam alignment
#187
Neato-Nick
closed
4 years ago
1
Possible to Compile to Windows exe File
#186
acherrera
closed
4 years ago
4
Correct clamp implementation in p7_oprofile.c.
#185
Augustin-Zidek
closed
4 years ago
5
Fix out by one error in p7_hmm.c
#184
Augustin-Zidek
closed
4 years ago
3
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