issues
search
EddyRivasLab
/
hmmer
HMMER: biological sequence analysis using profile HMMs
http://hmmer.org
Other
317
stars
70
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Query sequence from jackhmmer output not listed first after subsequent esl-alimerge merging
#333
nawrockie
closed
1 month ago
1
HMMER error
#332
mesti90
closed
2 months ago
2
dropping columns that have only one sequence in it can fail at the N-terminus.
#331
danielhhaft
opened
2 months ago
1
Is there any flag in jackhmmer to limit the sequence number?
#330
everburstSun
closed
2 months ago
2
strange behavior using `hmmemit` from single-sequence HMM
#329
snayfach
closed
3 months ago
2
makehmmerdb segmentation issue
#328
BioFalcon
closed
3 months ago
3
clarification: why is phmmer/jackhmmer better than blastp/psi-blast?
#327
JLSteenwyk
opened
3 months ago
0
Nhmmer running very slowly on certain sequences
#326
Augustin-Zidek
closed
3 months ago
4
Extracting sequences from nhmmer `--tblout`
#325
Euphrasiologist
opened
5 months ago
2
Updating HMMER
#324
eleanorwang
closed
6 months ago
0
Feature request: Limit the MSA depth in Jackhmmer/Nhmmer/Phmmer/Hmmsearch
#323
Augustin-Zidek
opened
6 months ago
12
Bug in hmmalign for multiple near-identical domains
#322
mhampton
closed
8 months ago
3
Hmmbuild returns different results for a3m and sto
#321
Augustin-Zidek
closed
6 months ago
6
Possible use-of-uninitialized-value found in nhmmer using MSAN
#320
Augustin-Zidek
closed
9 months ago
4
Nhmmer: different (2x smaller) e-values with fasta and hmmerdb
#319
Augustin-Zidek
closed
10 months ago
2
Using `int8_t` instead of `char` in `FM_METADATA`
#318
Augustin-Zidek
closed
10 months ago
4
Error messages about illegal command-line options appear to be getting cut off in some cases
#317
npcarter
closed
10 months ago
1
Parameters for building HMMs
#316
sanyalab
opened
11 months ago
2
Filter results of hmmsearch
#315
davidecrs
opened
11 months ago
0
hmmscan should just output tsv
#314
nhartwic
closed
1 year ago
6
Changelog Hmmer 3.4
#313
davidbio
closed
1 year ago
2
Returns error code when status is unset
#312
nawrockie
closed
1 year ago
1
read_asc{2,3}0hmm returning unset status
#311
nawrockie
closed
1 year ago
1
testsuite failures when built as library for infernal
#310
nawrockie
closed
1 year ago
2
Adds BLOSUM62 from easel/formats to testsuite/
#309
nawrockie
closed
1 year ago
1
`jackhmmer` returns "broken" homologs?
#308
ayaanhossain
closed
1 year ago
4
Fix `p7_tophits_Threshold` not resetting domain counts
#307
althonos
closed
1 year ago
2
hmmscan cannot utilize multiple threads.
#306
dianzhiyong
closed
1 year ago
2
Can you use Hmmer annotated files to get count table?
#305
lilyyycao
closed
1 year ago
6
Maximum sequence length HMMER can support
#304
perryXuu
closed
1 year ago
1
Is it possible to speed up phmmer searches with makehmmerdb ?
#303
gciaberi
closed
1 year ago
1
Target sequence length > 100K, over comparison pipeline limit
#302
Valentin-Bio
closed
1 year ago
2
errors with running tutorial
#301
MIndy123-cloud
closed
1 year ago
1
hmmer compatibility with the Apple M1 chips
#300
sunyj28
closed
1 year ago
1
hmmalign cannot open my sequence file even though it is located in my hmmer directory
#299
orspanish
closed
1 year ago
1
No description found on DESC line for hmm built using hmmbuild
#298
alex-hh
closed
1 year ago
2
select suitable sequence length
#297
AlisaGU
closed
1 year ago
1
domain can't be detected in the longer sequence
#296
AlisaGU
closed
1 year ago
6
standard realloc error when running hmmer in QIIME2
#295
Krupa-17
closed
1 year ago
1
nhmmer - Error: Invalid alphabet type in target for nhmmer. Expect DNA or RNA.
#294
DJ-Champion
closed
1 year ago
3
Hmmbuild segmentation failure
#293
spiceeeheu
closed
1 year ago
1
--incdomT cannot control the hit significance
#292
ZhangDengwei
closed
1 year ago
3
Error: No MAXL field in model(s)
#291
TangShan99
closed
1 year ago
4
HMMER3 fails to detect a valid flanking hit.
#290
Thernn88
closed
1 year ago
5
Error in make 'undefined reference to `worker_process_shard''
#289
qussai96
closed
1 year ago
13
to (ali coord) and to (env coord) larger than qlen in domtableout
#288
ilyavs
closed
1 year ago
6
Problem installing hmmers
#287
edzeta
closed
2 years ago
3
Add CI based on Github Actions
#286
julien-faye
closed
2 years ago
6
Is AVX for hmmer3 still in process?
#285
Gy-Lu
closed
1 year ago
2
hmmemit: whoops, HMM is bad!
#284
chasemc
closed
2 years ago
5
Next