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Hello,
Whenever I try: import spikeinterface.toolkit as st I get the error ModuleNotFoundError: No module named 'spikeinterface.toolkit'.
I installed spikeinterface using pip install spikeinterfac…
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Kilosort4 is out!
- [x] make wrapper in `sorters` (#2529)
- [x] make Dockerfile and image (https://github.com/SpikeInterface/spikeinterface-dockerfiles/pull/70)
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Hi, thank you very much for this package!
I am working with Maxwell data and sorting with spikeinterface , sorter_name="spykingcircus2".
According to my understanding, spikyng circus should receive …
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Hello,
I wrote a little script to cluster my data and it works fine on my computer. Now I'm trying to run the same on the computer of my colleague and after I run this code:
```
sorting_SC2 = si…
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https://github.com/SpikeInterface/spikeinterface/blob/69d1f9a3db9ada72812204ca25012efec5c1ff40/src/spikeinterface/core/waveforms_extractor_backwards_compatibility.py#L334-L342
This fails because it…
zm711 updated
9 months ago
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Hi all,
I have a question about the peak detection with the detect peak function. I was trying to plot the detection threshold on my data and visualize the detected peaks and that was my result:
…
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Because Kilosort doesn't know about the binary file, when automatically writing the params.py file it enters the present working directory (of the calling script) instead.
It would be nice to be able…
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output
```python
Nextflow 23.10.1 is available - Please consider updating your version to it
N E X T F L O W ~ version 22.10.8
Launching `main.nf` [comp-7ef205ce-d82d-4941-b62f-350e356] DSL1 - r…
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Hi,
I am trying to get KS4 to work on spikeInterface to sort long NPX1.0 recording sessions. Whether I use the docker image or a local KS4 installation, my GPU is not engaged, and processing take…
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Hi, I am currently analyzing waveforms from spikesorted data with Neuropixels. I will briefly explain the pipeline:
1. I record in broadband mode in spikeGLX.
2. Preprocess the data with Spikeinte…