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From the [docs](https://glow.readthedocs.io/en/latest/etl/variant-data.html#vcf):
> For the sharded VCF writer, the sample IDs are inferred from the first row of each partition and must be the same f…
Hoeze updated
5 months ago
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Hi Lucas,
Me and my colleagues and students are avid users of the grenepipe pipeline as it offers great flexibility. Meanwhile, we have various directories from which the pipeline was run, and we …
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Rule 7_mlRho looks for .bam.bai files as input even though it only uses the .bam files. However in both 3.1 and 3.3 bam processing steps, these bam.bai files are marked as temporary and deleted at end…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python 3.7
import sys; print(sys.version)
import platform; print(platform.python…
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Hi, thanks for the interesting tool! I was trying it out on a small yeast set (VCF from the MC pipeline, but treated with the suggested `bcftools norm -m -any`). However, I found a potential bug in th…
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Please confirm whether this is the final output because I was expecting a gvcf file once the run completed with these results in L1 file.
candidate_disc_filtered_cns.txt
candidate_disc_filtered_…
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Checklist
- [X] Modify `src/Snps/SNPs.php` ✓ https://github.com/liberu-genealogy/php-dna/commit/d12324a76555bffd1a8ca35b6ded0d0ca3f6129c [Edit](https://github.com/liberu-genealogy/php-dna/edit/sw…
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Hi,
After installing the package, I'm having difficulty getting the genotype command to run on some pacbio bam files.
Running the following;
advntr genotype -p -a NA07019_SC034768.bam --upda…
aob93 updated
3 months ago
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_WARNING: long post below. I'm hoping to help us build a shared conceptual framework to guide ongoing API design, and given the underlying complexity and the number of different priors, don't know how…
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Hi @rujinwang ,
Thank you for the great program.
I was able to run through the demo without any problem, however, I am running into issues when using a different data set, regardless of whether …