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parklab
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xTea
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
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Match up germline xTea results
#117
corinsexton
closed
3 days ago
0
Input file for pseudogene insertion calling
#116
selee222
opened
1 week ago
0
Sync results of original xTea with cli xTea
#115
corinsexton
closed
2 weeks ago
0
Add setup.py
#114
corinsexton
closed
2 weeks ago
0
Add model file and clean up extraneous files
#113
corinsexton
closed
2 weeks ago
0
minor error fixes
#112
corinsexton
opened
2 weeks ago
0
First commit refactoring command line interface
#111
corinsexton
closed
2 weeks ago
1
Will the coverage of BAM files affect the xTea results?
#110
sidi-yang
closed
2 weeks ago
3
filtering
#109
jasmineja
closed
3 weeks ago
4
About the case-control analysis in Illumina Short-read WGS Data
#108
recepyilmaz01
closed
1 month ago
3
xTea output file understanding
#107
hhysun
closed
1 month ago
5
xTea_long getting stuck, no errors, during wtpoa-cns, running HG38
#106
vaksmaz
opened
2 months ago
2
Alu output didn't go through filter step?
#105
sidi-yang
closed
2 months ago
2
Possible to merge TE sites and do genotyping in each sample?
#104
dr-ashu-geno
closed
1 month ago
1
temp files burst out
#103
sidi-yang
closed
2 months ago
2
Long_reads: File detailing which reads show transductions of deletions
#102
vaksmaz
closed
2 months ago
1
Very long length of L1 insertion
#101
sidi-yang
closed
3 months ago
1
x_TEA_main.py: error: no such option: --bamsnap
#100
sidi-yang
closed
3 months ago
1
line 1133, IOError: [Errno 2] No such file or directory: 'null'
#99
sidi-yang
closed
3 months ago
1
xTea Long_read SyntaxWarning
#98
vaksmaz
closed
3 months ago
6
Prevent broken symlinks
#97
wigasper
opened
4 months ago
0
Long read cannot find temp files
#96
Shezara7
closed
3 months ago
1
interpretation of GENE_INFO in output file
#95
dongjuleem
closed
5 months ago
1
WES issues
#94
Nurpe
closed
3 months ago
1
Sporadic inconsistent errors with xtea_long
#93
yuliamostovoy
opened
8 months ago
5
Merge clip and disc step error
#92
Shezara7
closed
8 months ago
12
visual inspection using IGV
#91
dongjuleem
closed
10 months ago
0
Questions about the output file
#90
zshu-alt
closed
11 months ago
3
Using the code in github still doesn't solve the problem
#89
zshu-alt
closed
11 months ago
2
long read support with chm13
#88
maxfieldk
closed
1 month ago
3
-f: steps to run. (5907 means run all the steps);
#87
axz91
closed
1 year ago
1
default slurm script with wrong email
#86
axz91
closed
1 year ago
1
Pre-generated Alu database
#85
drtconway
closed
1 year ago
1
no such option: --bamsnap
#84
hzlnutspread
closed
1 year ago
7
Cannot find the target directory
#83
zshu-alt
closed
1 year ago
2
HERV doesn't generate .vcf and gets error while reading reads_fa folder
#82
eduymaz
closed
1 year ago
1
Issue running locally
#81
RSWilson1
closed
1 year ago
1
Handling duplicates
#80
mikecuoco
closed
1 year ago
2
no enough disc support!
#79
ohan-Bioinfo
closed
1 year ago
1
Mosaic calling - missing parameter?
#78
mukamel-lab
closed
1 year ago
2
output vcf
#77
Sun-Wu-Kong-666
closed
1 year ago
2
sklearn version?
#76
mukamel-lab
closed
1 year ago
1
output question
#75
ohan-Bioinfo
closed
3 months ago
12
Gene list Error
#74
ohan-Bioinfo
closed
1 year ago
10
DeprecationWarning
#73
ohan-Bioinfo
closed
1 year ago
0
POS, SVLEN, and END are seemingly discordant in VCF output
#72
RyanVidegar-Laird
closed
1 year ago
1
Issue with generated run_xTEA_pipeline.sh script
#71
slavictoast
closed
1 year ago
3
--lc: invalid integer value:
#70
ohan-Bioinfo
closed
1 year ago
6
Question about BGISEQ-500 using xtea
#69
huangyuanf
closed
1 year ago
2
Failed to retrieve block: unexpected end of file
#68
mhguo1
closed
1 year ago
4
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