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Hi Fabian,
I meet a problem when using nnUNet for inference, the log print this sentence "This output is too large for python process-process communication. Saving output temporarily to disk", but th…
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Hi，The images in the LNDb dataset consist of raw and mhd files. I need to combine these two files and then convert them into nii.gz format. However, the labels are composed of three raw and three mhd …
CYYJL updated
6 months ago
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Hello,
I have used nnU-Net v1 many times before, but just switched to v2 as I want to use pretraining for some of my datasets. I followed the instructions given on here for the preparation for pre…
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Preprocessing, training and inference scripts should be put in a `nnunet_scripts` folder. @carlosnazzarian can you confirm you have access to this repo? e.g. assign yourself to this issue
List of t…
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Hello, when I was preprocessing the MSD challenge task 006 dataset ( Target: Lung and cancer segmentation), I searched for this error on Google and tried to fix it, but the error still persists. Do yo…
CYYJL updated
5 months ago
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师兄你好，估计您的代码按nnunet构建的，想向您了解一下在训练中每轮输出的三个dice，是脑胶质瘤的wt、et、tc分别的dice分数吗，我data.json中的label是这么构建的
![RH7%`S…
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I am a rookie in nnUNet, when i try to change the PlainConvEncoder to ResidualEncoderUNet ,there is an error showing:
Traceback (most recent call last):
File "/HOME/.conda/envs/zheng_nnunet_new/bi…
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Good morning, I am having some problems trying to run nnunet for 2d configuration, I am getting the error i attached below.
I plotted the sizes of variables gt and y_onehot in the forward function …
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Some of our segmentations created by nnU-Net models have "holes" in them. That is, they contain voxels in the interior of the brain which are labeled as 0 or background.
Initial segmentations prod…
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Hello
I was training a segmentation model on this m/c :
NVIDIA GeForce RTX 4090, CUDA Version: 12.1, pytorch version 2.0.0+cu118.
Encountered the following error log while trainin…