-
Many reactions in reactome involve phosphorylation, or other post translational modifications. e.g. http://www.reactome.org/PathwayBrowser/#/R-HSA-163685&SEL=R-HSA-163773&PATH=R-HSA-1430728
Ideally …
-
There was a call for implementation of the protein proximity index in Coloc_2 on the [Coloc page of the ImageJ/Fiji wiki](http://imagej.net/Colocalization_Analysis) that I have removed:
> Maybe someo…
-
Issue reported by email from [Scott Brown](http://www.holtlab.ca/personnel.html#scottb):
>I have a question regarding the protein sequence output from Isovar. I have seen multiple cases where th…
-
- [x] The process of adding nodes is slow, we should figure out what part is slow (i.e. adding edges, getting current positions etc). There might also be a built-in delay in the addCyNodes function. -…
-
Mark,
We have received your message and will make every effort to respond to you within a reasonable amount of time.
First Name: Mark
Last Name: Larance
Email: mark.larance@sydney.edu.au
Subject: s…
-
How do you output a protein fasta (.faa)?
Also, I keep getting an error for start/stop options?
Do I use prodigal on the orfs this calls?
-
Hi there,
Sorry if this is a dumb question but I'm fairly new to blender. I've installed the plugin and made my first render. However, I would like to automate this with a python script to downloa…
-
Please provide PDB and AlphaFold xref datasets for 2.8
- For PDB 3D structures follow the selection criteria below
- Always provide AlphaFold structures
Here are the selection criteria for PDB …
-
* **PTHR ID & PTN node:**
GO:0003961 | O-acetylhomoserine aminocarboxypropyltransferase activity | IBA with PTN002887184 , S000004294 , CAL0000188058 , met17
* **Sequences with problematic a…
-
Hi, thanks for the great work for protein tasks. I am also interested in using pronet but it seems the scripts for running atom3d tasks are missing too? Would you mind releasing those scripts to repro…