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A good starting point is Pfam_SARS. I reviewed it a few weeks ago, and IIRC it has pretty good coverage of Betacov genes, but doesn't include some of the genes towards the 3' end found in other genera…
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As DNA extraction is such a central point in contemporary plant research, I would like to draw attention to an issue that has been bugging me for some time. Not sure here is the right place to mention…
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Why the pre-treated pdb files with OPM do not work with pdb2pqr?
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**Is your feature request related to a problem? Please describe.**
For visualisation of protein dynamics or geometry optimizations the PDB information should be preserved in the optimization log. Rig…
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**Is your feature request related to an existing issue or bug?**
no
**Is your new feature related to a general problem?**
Typically annotation of large secretion systems (T3SS, T4SS, T6SS, etc) c…
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Hi,
Let's have a vote here to decide on a project name. You can use the social "+1" feature to add your votes for the various names (see smiley icon).
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Hello,
I have noticed that eventhough you can select chains as :A, it seems not to be possible to select by segid (MDAnalysis) or segname (vmd) like PROA. This would be usefull since psfs don't see…
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Some possible useful examples here: https://github.com/chrisjsewell/chrisjsewell.github.io/blob/master/3d_atomic/3D%20Atomic%20Visualisation.ipynb
See also: https://ipymd.readthedocs.io/en/latest/ …
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I am thinking of adding some mcmc convergence test like Gelman-Rubin Diagnostics in Blang. For trees, maybe a test that can calculate the average standard deviation of split frequencies. But I will tr…
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When running QC/QA, the first thing that is done is a pairwise alignment. The quality of this alignment can have a big impact of the result. The setting of gap score and gap extend penalties should be…