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It's OBO policy to never delete an ID - they are always obsoleted or merged.
Can you add an obsoletion record for this? Ideally this would indicate a possible replacement term, and ideally obsoletion…
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top 33 proteins are selected from the statistical tests based on the non imputed data. Then, Portia (needs extra work) will predict the network based on the non imputed data. The results can be compar…
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Hi
I am trying to get two proteins, initially 10A away to come closer by defining a force between few pairs of atoms from either chains. Is there a way to do this using OpenMM?
From an earlier i…
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I believe this is related to issue #21
I have a gff3 that only contains gene and CDS lines (no corresponding exon lines). When I run gffread with any combination of -w / -x / -y the transcript …
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Got the following example
```r
> library(ensembldb)
> library(AnnotationHub)
> edb library(Pbase)
> ## Fetch the protein ENSP00000269305
> prot ## Mapping the protein domains to the genome wor…
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I am wondering on how to analyze the mzid output from the MS-GF+ for protein quantifications. Which software of tools can be used to quantify proteins identified by this pipeline? I am stuck and I am …
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Anything I didn't think of?
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Would would require a tab delimited format with
Systemtic ID mandatory
gene optional
RNA/protein (Madatory)
number (in mins?)
conditions?
Evidence (mandatory)
Publication
date
Anything…
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Currently when UniProt is queried via the web service, an RDF is parsed using rdflib.
Example: http://www.uniprot.org/uniprot/O61608.rdf
It seems like some UniProt entries aren't rdflib compatible…