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lgatto
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Pbase
Manipluating and exploring protein and proteomics data
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Pbase check errors on BioC
#51
sgibb
closed
5 years ago
3
Fix check
#50
jorainer
closed
6 years ago
0
ensembldb-related check errors
#49
jorainer
closed
6 years ago
5
mapToGenome fail to map protein domain
#48
apastore
opened
6 years ago
2
Add PRanges and move part of functionality to ensembldb?
#47
jorainer
opened
6 years ago
7
Mapping to genome fails without apparent reason
#46
jorainer
opened
6 years ago
1
Add/replace pranges in Proteins object
#45
jorainer
opened
6 years ago
0
Support proteogenomics formats
#44
lgatto
opened
7 years ago
0
Check strand checks in .mapToGenome2
#43
jorainer
opened
7 years ago
0
Pbase build failure on bioc devel/release
#42
sgibb
closed
7 years ago
13
Pbase API
#41
lgatto
opened
7 years ago
3
pranges selection
#40
lgatto
opened
7 years ago
3
Documentating EnsDb methods
#39
lgatto
closed
7 years ago
2
RFC: changing Proteins class
#38
lgatto
opened
7 years ago
11
Merge the ensembldb branch to master
#37
jorainer
closed
7 years ago
0
Documentation for Proteins,EnsDb and mapToGenome,EnsDb methods
#36
jorainer
closed
7 years ago
1
No Uniprot ID support yet for ensembl methods
#35
jorainer
closed
7 years ago
10
What names to be used for the GRangesList returned by mapToGenome?
#34
jorainer
opened
7 years ago
4
New 1.0.0 Project and how to keep track of changes, ideas etc
#33
jorainer
closed
7 years ago
1
Pbase roadmap to version 1.0.0: changes in Proteins
#32
jorainer
closed
7 years ago
1
Pbase roadmap to version 1.0.0: ensembldb integration
#31
jorainer
closed
7 years ago
6
benchmark for .mapToGenome2
#30
jorainer
opened
7 years ago
0
mapToGenome fails to map - strand features correctly
#29
jorainer
closed
7 years ago
3
Is unique seqnames required for Proteins?
#28
jorainer
opened
8 years ago
7
pcols/pmetadata method fails to return empty elements
#27
jorainer
closed
8 years ago
2
Proteins object good to represent protein annotation?
#26
jorainer
closed
7 years ago
1
pcols accessor and replacement method
#25
lgatto
closed
8 years ago
12
New accessor for peptide ranges via AAStringSet
#24
baderd
closed
8 years ago
12
Packages for BioC 3.2 (devel) build/check errors
#23
lgatto
closed
9 years ago
1
Document plotting helper functions
#22
lgatto
closed
9 years ago
0
Use plotting helper functions in vignettes
#21
lgatto
closed
9 years ago
0
Parallelise pmapToGenome
#20
lgatto
opened
9 years ago
3
Protein coverage
#19
lgatto
closed
9 years ago
4
Failing test in test_heavylabels-functions
#18
lgatto
closed
9 years ago
1
Functions instead of generics
#17
lgatto
closed
9 years ago
1
Document non-unique peptide hits
#16
lgatto
opened
9 years ago
2
Align peptide and protein sequences
#15
lgatto
opened
9 years ago
0
Exon junction
#14
lgatto
closed
9 years ago
2
mapToGenome,Proteins,GRangesList
#13
lgatto
closed
9 years ago
1
Use names
#12
lgatto
closed
9 years ago
1
sandbox on github but not svn
#11
lgatto
opened
9 years ago
4
remove GNU Makefile extensions
#10
sgibb
closed
9 years ago
0
Building vignette `Pbase-data.Rmd` fails
#9
sgibb
closed
9 years ago
2
Building vignette `mapping.Rmd` fails.
#8
sgibb
closed
9 years ago
0
.fastaCommentParser fails when GN has a space
#7
lgatto
closed
10 years ago
5
Calculate heavy labeled peptides
#6
sgibb
closed
9 years ago
2
.peptidePosition doesn't work for multiple peptides per protein
#5
sgibb
closed
9 years ago
10
Pbase FTBFS
#4
sgibb
closed
10 years ago
3
add .calculateIsoelectricPoint
#3
sgibb
closed
10 years ago
3
Plot Proteins
#2
lgatto
opened
10 years ago
0
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