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I need to read preprocessed recordings from kilosort 2/2.5/3, i.e., `test_wh.dat` to compute some specific metric (mimicking ML scripts in-house developed a while ago). Is it possible to create a spik…
rat-h updated
7 months ago
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### Describe the issue:
Hello,
I've found that running the same exact data through kilosort3 results in different outputs each time the algorithm is run. I've skimmed through the code base looking…
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In some places it would be cool to test that certain processing steps are respecting the user-set times on a recording object (e.g. with `set_times()`). Ideally it would be nice to do this through gen…
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Run 9595167
Seem to be two errors: running out of memory during spike-sorting, then a KeyError.
This also seems like a repeat of https://github.com/AllenNeuralDynamics/aind-ephys-spikesort-kilos…
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As originally pointed out in this [issue](https://github.com/SpikeInterface/spikeinterface/issues/728#issuecomment-1161975819), running HerdingSpikes through SpikeInterface then accessing the resultin…
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output
```python
Nextflow 23.10.1 is available - Please consider updating your version to it
N E X T F L O W ~ version 22.10.8
Launching `main.nf` [comp-7ef205ce-d82d-4941-b62f-350e356] DSL1 - r…
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Tried to register actions in educloud, but it couldn't find depth measurements (would cause issues in downstream scripts and is used to separate different experiments in the same animal). The raw data…
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Hi, in running Wave_Clus in local, the sorter just froze in initilizing Matlab, any idea how to fix? Thank you so much!
```
si.WaveClusSorter.set_waveclus_path(WC_path)
sorter_params = {'enable_sort_…
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Hi!
I was trying to use one of the submodules in the quality metrics module - ``compute_synchrony_metrics`` but ran into ``sorting_analyzer not defined error``. Had a chat with @alejoe91 after that w…
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### Describe the issue:
Hi! I am new here and I come across with some problems when I trying to …