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My need for annotations is to auto-generate a user interface similar to Galaxy (https://docs.galaxyproject.org/en/master/dev/schema.html). Annotations would allow FireCloud or another client to automa…
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Version is available but there is two lines of comments before VERS line.
```
~Version Information
#MNEM.UNIT DATA DESCRIPTION
#--------- …
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## Bug Report
Go to
https://staging.dockstore.org/containers/quay.io%2Fdenis_yuen%2Fdockstore-tool-imports
Displays a description for https://staging.dockstore.org:8443/containers/218/cwl?tag=y…
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---
## Expected Behavior
cwltool should resolve file formats specified as links (e.g., after `--pack`-ing a workflow)
## Steps to reproduce
```
cd /path/to/common-workflow-language/v1.0/v1.0
…
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Hello,
We saw that you have created some wrappers and a pipeline script for CWL users to run GATK. That is really great, and we appreciate it! That being said, we have a few suggestions to improve th…
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I would like an aid with the error below that I see when trying to register a Dockerfile hosted on Dockerhub.
I created a CWL for this Dockerfile and it is in the root of my GitHub. I registered th…
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If a workflow ends in a non-Success state, no output is produced at all, even if partial output is available.
That's annoying for the mdstudio case, where much of the output is actually log files t…
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Hi,
the compliance test tool (v1.0) in file [null-expression1-tool.cwl](https://github.com/common-workflow-language/common-workflow-language/blob/master/v1.0/v1.0/null-expression1-tool.cwl) expects…
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## Expected Behavior
Tell us what should happen
I am using nodejs / typescript to run the cwltool with code like this:
``` Typescript
conn.exec(command, (err: Error, stream: ssh.ClientChannel)…
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## Bug Report
GUI generated misformatted workflow launch with message
See https://staging.dockstore.org/workflows/briandoconnor/dockstore-workflow-md5sum/dockstore-wdl-workflow-md5sum
dyuen@od…