common-workflow-library legacy issues

common-workflow-library / legacy

Deprecated

https://github.com/common-workflow-library/bio-cwl-tools

Apache License 2.0

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issues

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Change the Pitagora-CWL repository URL

#156 inutano closed 5 years ago
0
Hyperlink DOIs to preferred resolver

#155 katrinleinweber closed 5 years ago
2
fix typo

#154 corburn closed 5 years ago
1
Add test result info

#153 manabuishii closed 5 years ago
0
Test master branch at travis

#152 manabuishii closed 5 years ago
0
Update lobSTR to use label

#151 BenjaminHCCarr closed 5 years ago
1
Modifications to trimmomatic and STAR

#150 biokcb closed 6 years ago
3
Lobstr update

#149 mr-c closed 6 years ago
0
Add secondary files to BWA

#148 multimeric closed 6 years ago
0
fixed URL of h3abionet/h3abionet16S on README

#147 inutano closed 6 years ago
0
[FOLLOW-UP] Apply Custom Type to VALIDATION_STRINGENCY in Picard

#146 jmchung closed 6 years ago
2
Fix data type and add options in picard

#145 jmchung closed 6 years ago
3
gatk_germline.png change trimmamatic to trimmomatic

#144 raonyguimaraes closed 6 years ago
2
add missing '+'

#143 pvanheus closed 6 years ago
0
split samtools index, use 2ndFiles

#142 mr-c closed 6 years ago
0
Error running lobSTR workflow

#141 MarkRobbo opened 6 years ago
0
All remaining draft-3 to v1.0

#140 mr-c closed 6 years ago
0
another Trimmomatic upgrade

#139 mr-c closed 6 years ago
0
Invalid job input record for workflow

#138 rabi1029 opened 6 years ago
2
Did you include a $schemas section?

#137 evan-wehi closed 7 years ago
3
refresh bwa index

#136 mr-c closed 7 years ago
0
finish move of GATK CWL descriptions to H3ABioNet

#135 mr-c closed 7 years ago
0
First Dockerfile for subread

#134 andersgs opened 7 years ago
0
fix tests

#133 mr-c closed 7 years ago
0
[WIP] major refactor of Trimmomatic

#132 mr-c closed 7 years ago
0
GATK workflow README references Trello board which is either private or gone

#131 tfmorris closed 7 years ago
1
Files and documents from the SANBI CWL tutorial session (March 2017).

#130 pvanheus closed 7 years ago
3
Message from GATK team

#129 knoblett closed 7 years ago
7
Yassine changes to h3abionet-gatk-workflow

#128 hocinebendou closed 7 years ago
1
H3abionet gatk workflow

#127 hocinebendou closed 7 years ago
0
WIP LobSTR v1.0 upgrade

#126 StarvingMarvin closed 7 years ago
6
upgrade tools to v1.0

#125 mr-c closed 7 years ago
0
Simplify hello world example

#124 mr-c closed 7 years ago
0
H3abionet gatk subworkflow vqsr

#123 hocinebendou closed 7 years ago
1
Subworkflow from HaplotypeCaller to snpEff

#122 hocinebendou closed 7 years ago
1
add example expression tool

#121 mr-c closed 7 years ago
0
H3abionet gatk workflow vqrs

#120 hocinebendou closed 7 years ago
1
VQSR - SNPs

#119 hocinebendou closed 6 years ago
2
Bamstat and Depth of coverage in workflow

#118 hocinebendou closed 7 years ago
1
bring GATK upgrades to the main

#117 mr-c closed 7 years ago
0
[WIP] Update gatk invocations

#116 mr-c closed 7 years ago
1
update Docker invocation

#115 mr-c closed 7 years ago
0
Basic testing

#114 mr-c closed 7 years ago
0
split out Dockerfiles

#113 mr-c closed 7 years ago
0
fastqc changes

#112 hocinebendou closed 7 years ago
1
Fixed bwa-mem.cwl from draft-3 to v1

#111 phelelani closed 7 years ago
2
Fixed trimmomatic.cwl from draft-3 to v1

#110 phelelani closed 7 years ago
1
Samtools upgraded

#109 mustafaghali closed 7 years ago
1
Add files via upload

#108 mustafaghali closed 7 years ago
0
Feature/feature gatk DoC brian

#107 briandoconnor closed 7 years ago
1