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common-workflow-library
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legacy
Deprecated
https://github.com/common-workflow-library/bio-cwl-tools
Apache License 2.0
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Upgraded trimmomatic.cwl to trimmomatic_vi.cwl
#106
phelelani
closed
7 years ago
3
[WIP] Converting GATK tools from draft-3 to v1.0
#105
yassineS
closed
7 years ago
1
[WIP] GATK workflow
#104
mr-c
closed
7 years ago
1
[WIP] H3abionet 16 s
#103
mr-c
closed
7 years ago
1
Stream c
#102
ShakunBaichoo
closed
7 years ago
0
Snpeff hocine
#101
hocinebendou
opened
7 years ago
2
Converting GATK tools from draft-3 to v1.0
#100
yassineS
closed
7 years ago
0
Adding Apache License Headers
#99
ThilinaManamgoda
opened
7 years ago
0
Create CONTRIBUTING.rst with portability guidelines
#98
mr-c
opened
7 years ago
0
add simple kallisto wrappers and workflow
#97
mr-c
closed
7 years ago
0
Travis check fail
#96
anton-khodak
closed
7 years ago
2
Fixing make-to-cwl example
#95
StarvingMarvin
closed
7 years ago
0
fail validation: make-to-cwl/dna.cwl
#94
jeremiahsavage
opened
8 years ago
2
[WIP] CNVkit tool definitions
#93
anton-khodak
opened
8 years ago
8
use schema.org rdfa schema
#92
mr-c
closed
8 years ago
0
Fix #88 in orig repo about creating recursive symlink for .fai file
#91
samuell
opened
8 years ago
2
permanentFail when running FestivalDemo with DockerRequirement
#90
cnjr2
closed
8 years ago
1
deepTools program, bamCoverage command
#89
alexbarrera
closed
7 years ago
0
samtools faidx replaces fasta file with symlink pointing to itself
#88
samuell
opened
8 years ago
0
Trimmomatic tool in CWL
#87
alexbarrera
closed
8 years ago
1
SPP tool wrapping the run_spp.R script used in ENCODE
#86
alexbarrera
closed
8 years ago
1
[WIP] superenhancer-final
#85
bharath-cchmc
opened
8 years ago
0
Add tool wrapper for bwa index
#84
samuell
closed
8 years ago
1
Move docker import to hints in bwa aln
#83
samuell
opened
8 years ago
0
superenhancer
#82
bharath-cchmc
closed
8 years ago
0
macs2-callpeak Command Line Tool definition
#81
alexbarrera
closed
8 years ago
7
superenhancer-test-passed
#80
bharath-cchmc
closed
8 years ago
1
BWA tools aln/mem
#79
portah
closed
8 years ago
4
Use picard-tools script rather than full path to Picard jar
#78
samuell
opened
8 years ago
4
add format example
#77
mr-c
closed
7 years ago
0
Add EDAM file types everywhere
#76
mr-c
opened
8 years ago
0
compile example command does not work
#75
kblin
opened
8 years ago
2
Test files & sccript for bam-genomecov-bigwig.cwl workflow
#74
portah
closed
8 years ago
0
fixed bugs with bam-genomecov-bigwig sort step
#73
psaffrey-illumina
closed
8 years ago
1
Typo in hello
#72
SamGG
closed
7 years ago
1
scidap workflow missing test data, draft-3 compat
#71
mr-c
opened
8 years ago
1
update everything to draft3 final
#70
mr-c
closed
8 years ago
0
another set of CWLs DRAFT3 ready and schema.org metadata
#69
portah
closed
8 years ago
0
DRAFT3, schema.org ready scripts Alea/bowtie/STAR
#68
portah
closed
8 years ago
0
Medical imaging workflow examples
#67
fedorov
opened
8 years ago
2
cannot run hello-param.cwl unless --non-strict
#66
zyxue
closed
7 years ago
1
moving to draft3 and travis fix
#65
portah
closed
8 years ago
0
Parsing paired-end reads for Ray assembler
#64
animesh
opened
8 years ago
0
Ray
#63
animesh
opened
8 years ago
0
lobSTR example fails: node-engine.cwl is a link to nothing
#62
prismofeverything
closed
8 years ago
4
Examples do not run as written
#61
prismofeverything
closed
5 years ago
8
simplify hello.cwl
#60
smoe
opened
8 years ago
1
[WIP] kWIP tool definition
#59
kdm9
closed
7 years ago
0
Add vim temp files to gitignore
#58
kdm9
closed
8 years ago
1
DOI and corresponding README
#57
portah
closed
8 years ago
0
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