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common-workflow-library
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legacy
Deprecated
https://github.com/common-workflow-library/bio-cwl-tools
Apache License 2.0
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Ontology ideas, samtools-faidx fix
#56
portah
closed
8 years ago
0
[WIP] GATK-Variant calling workflow files
#55
FarahZKhan
closed
7 years ago
1
workflow update and force tests
#54
portah
closed
8 years ago
0
New tool description bcftools consensus and force test to check specific tool
#53
portah
closed
8 years ago
0
tools: bcftools/alea workflow: consensus genome from the reference
#52
portah
closed
8 years ago
0
Readme with SPARQL, and new few tools
#51
portah
closed
8 years ago
0
bwa-docker & remove incomplete bwa's
#50
portah
closed
8 years ago
0
more picard examples, syntax fixes, test files
#49
portah
closed
8 years ago
0
dockerImageId not yet ready
#48
portah
closed
8 years ago
0
travis CI
#47
portah
closed
8 years ago
0
[WIP] Tests and name convention for the files maintained by THE UNIVERSITY OF MELBOURNE
#46
FarahZKhan
closed
8 years ago
0
Farah z khan patch 1
#45
FarahZKhan
closed
8 years ago
0
[WIP] Hiveplots workflow demo & tool descriptions
#44
mr-c
opened
8 years ago
0
Create picard-docker.cwl
#43
FarahZKhan
closed
8 years ago
0
Update markDuplicates.cwl
#42
FarahZKhan
closed
8 years ago
0
Error when docker added for Picard tools.
#41
FarahZKhan
closed
8 years ago
1
Update markDuplicates.cwl
#40
FarahZKhan
closed
8 years ago
1
Update GATK-realignTargetCreator.cwl
#39
FarahZKhan
closed
8 years ago
0
Update GATK-indelRealigner.cwl
#38
FarahZKhan
closed
8 years ago
0
Rename realignTargetCreator.cwl to GATK-realignTargetCreator.cwl
#37
FarahZKhan
closed
8 years ago
0
Create baseRecalibrator.cwl
#36
FarahZKhan
closed
8 years ago
0
Create printReads.cwl
#35
FarahZKhan
closed
8 years ago
0
Create haplotypeCaller.cwl
#34
FarahZKhan
closed
8 years ago
0
Create indelRealigner.cwl
#33
FarahZKhan
closed
8 years ago
0
Update realignTargetCreatorJob.json
#32
FarahZKhan
closed
8 years ago
0
Update realignTargetCreator.cwl
#31
FarahZKhan
closed
8 years ago
0
Update realignTargetCreatorJob.json
#30
FarahZKhan
closed
8 years ago
0
Update realignTargetCreator.cwl
#29
FarahZKhan
closed
8 years ago
0
Create gatk-docker.cwl
#28
FarahZKhan
closed
8 years ago
0
remove bam's files
#27
portah
closed
8 years ago
0
draft3 conversion and some metadata suggestions
#26
portah
closed
8 years ago
0
Create PrintReads.cwl
#25
skanwal
closed
8 years ago
0
Create BaseRecalibrator
#24
skanwal
closed
8 years ago
0
Create HaplotypeCaller.cwl
#23
FarahZKhan
closed
8 years ago
0
Create indelRealigner
#22
FarahZKhan
closed
8 years ago
0
STAR description in draft3
#21
portah
closed
8 years ago
0
Create markDuplicates.cwl
#20
skanwal
closed
8 years ago
2
Create createDict.cwl
#19
skanwal
closed
8 years ago
2
Create mergeSam.cwl
#18
skanwal
closed
8 years ago
4
Create sortSam.cwl
#17
skanwal
closed
8 years ago
4
Create buildBamIndex.cwl
#16
skanwal
closed
8 years ago
2
Create realignTargetCreatorJob.json
#15
FarahZKhan
closed
8 years ago
2
Create realignTargetCreator.cwl
#14
FarahZKhan
closed
8 years ago
7
samtools faidx with CreateFileRequirement and some cleanups
#13
portah
closed
8 years ago
0
Bwa bulk
#12
portah
closed
8 years ago
0
whole pack of bedtools/samtools/STAR - auto generated files
#11
portah
closed
8 years ago
1
Add Apache license and make it clear that contributions are Apache 2.
#10
tetron
closed
8 years ago
4
[WIP] pRESTO pipeline
#9
mr-c
opened
8 years ago
0
Docker has issues when run on MacOS
#8
FarahZKhan
closed
8 years ago
0
Create bwa-memJob.json
#7
FarahZKhan
closed
8 years ago
0
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