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I am trying to use giraffe to genotype structural variants of one chromosome from a mamilian genome. I am following this tutorial.
https://github.com/vgteam/vg/wiki/SV-genotyping-with-vg and the comm…
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I have been trying to understand the consequences of the last two slides here https://github.com/GTB-tbsequencing/mutation-catalogue-2023/blob/main/Final%20Result%20Files/MCNV.pdf and what they mean f…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
1.6.1
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
_No respo…
ymcki updated
7 months ago
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Hi, I'm running the first step (`pileup_and_phase.R`)...
```
Rscript pileup_and_phase.R \
--label x21922_mm8 \
--samples x21922_mm8 \
--bams /home/igoroz/jgarces/scCSCMM_sara/data/2…
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**Submitting author:** @pierrepeterlongo (Pierre Peterlongo)
**Repository:** https://github.com/pierrepeterlongo/back_to_sequences/
**Branch with paper.md** (empty if default branch):
**Version:** v0…
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I followed the directions exactly but I get this error. Do you know what's going wrong? Thanks.
bash-4.2$ singularity exec --bind $HD_DIR hapdup_0.6.sif hapdup --assembly $HD_DIR/assembly.fasta -…
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genotyping data for Hydrogen Cyanide (HCN) KASP marker validation for NaCRRI
isaak updated
9 months ago
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### Description of the bug
Some scores, such as PGS000026, have SNPs which lack rsIDs and positions. How does pgsc_calc handle these situations? Is an error thrown? (I don't believe so.) Is the sco…
Fiwx updated
7 months ago
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There is a button on the UI (/breeders_toolbox/protocol/id) to delete genotyping protocols and all associated data but it doesn’t work when there is no collected genotyping data. In the backend (Genot…
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Hi, I'm new to snakemake, and have no idea of submitting Scanneo2 jobs to HPC. Any instructions would be very helpful! Thanks!
Regards,
Xiao