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ylab-hi
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ScanNeo2
Snakemake-based computational workflow for neoantigen prediction from diverse sources
MIT License
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Run ScanNeo2 without DNAseq
#39
quirze
closed
1 month ago
3
VEP error
#38
androidpifu
opened
2 months ago
9
Without normal sample
#37
ilovegreentea
closed
2 months ago
1
Error happend!: Command 'regtools junctions extract -i 5 -I 10000000'
#36
androidpifu
closed
2 months ago
6
How to cogfigure work environment
#35
androidpifu
closed
2 months ago
2
custom HLA
#34
LucaMannino
closed
3 months ago
2
Normal Sample
#33
LucaMannino
opened
3 months ago
3
can i use targeted sequencing? rather than WES..
#32
ilovegreentea
closed
3 months ago
1
Prevent trigger that re-runs certain rules (/tmp)
#31
riasc
opened
4 months ago
0
Error catching routines
#30
riasc
closed
5 months ago
0
Extracting RG for DNAseq data when input is BAM required
#29
riasc
opened
5 months ago
0
Readgroup issue
#28
riasc
closed
5 months ago
0
Rule error hlatyping
#27
riasc
closed
5 months ago
0
Can I run the pipeline with slurm on HPC?
#26
Xiao-Zhong
closed
3 months ago
21
cleave peptide for fusion gene
#25
nttg8100
opened
5 months ago
3
Where I can download the required argument peptides
#24
nttg8100
closed
5 months ago
2
Calling the long non indel from both DNAseq and RNAseq bam file
#22
nttg8100
closed
5 months ago
5
Aligned option using star
#21
nttg8100
closed
6 months ago
2
Spladder parallel
#20
riasc
closed
6 months ago
0
add cpus to spladder
#19
nttg8100
closed
6 months ago
2
Request TESLA*fastq.gz
#18
nine-sarayut
closed
6 months ago
3
Paired-end Bam files causes error exception in featureCounts
#17
riasc
closed
8 months ago
2
nthreads cannot be larger than environment variable
#16
riasc
closed
6 months ago
1
Implemented Similarity Measures
#15
riasc
closed
8 months ago
0
Add routine to catch missing input data on filesystem
#14
riasc
opened
8 months ago
0
Update Snakemake 8 and Gather/Scatter Indel Calling
#13
riasc
closed
8 months ago
0
Corrected Linkage of Prediction Tools to Prioritization
#12
riasc
closed
9 months ago
0
Fix Missing/Outdated Genome in Exitron Calling (Switch to ENSEMBL)
#11
riasc
closed
9 months ago
0
Fix Missing-Annotation Error in Exitron Calling
#10
riasc
closed
9 months ago
0
Fixed Issues when no normal samples is provided
#9
riasc
closed
9 months ago
0
GATK Speedup Gather&Scatter
#8
riasc
closed
8 months ago
1
Improve Download of VEP Cache (+small fixes)
#7
riasc
closed
10 months ago
0
Slow FTP download of VEP Cache
#6
riasc
closed
10 months ago
1
Minor fixes
#5
riasc
closed
10 months ago
0
MHC-I genotyping on Split BAMs
#4
riasc
opened
10 months ago
1
Devel
#3
riasc
closed
1 year ago
0
Devel
#2
riasc
closed
1 year ago
0
updating automated routines
#1
riasc
closed
1 year ago
0