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I am trying to get an "induced" tree for a set of reptile genera, using our [R package for the Open Tree API](https://github.com/ropensci/rotl/). I can match names using the TNRS and get a set of OTT …
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Hi @benjjneb this isn't an issue with dada2 but more a general question. We're using a slightly modified version of the big data workflow implemented in Nextflow for processing PacBio data, but the k…
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dwc:scientificNameAuthorship has empty values as: "< Unspecified Agent >", 46902 records (11%) are affected by it, 43299 genus, 173 species, 1 subspecies.
See: https://www.checklistbank.org/datas…
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From attempting to recreate the figure from the underlying data (and my own analysis of the FASTQ files), I think there is a misplaced False Negative annotation on Figure 3. I do not believe this chan…
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Currently if a seedling is unidentified, it is assumed by the database to be a shrub seedling - at least as far as exports go. We should rethink if this is correct.
For species that are identifie…
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@Daniel-Mietchen
```
$ echo -e "\tApis mellifera" | nomer append plazi
[main] INFO org.globalbioticinteractions.nomer.match.TermMatcherRegistry - using matcher [plazi]
[main] INFO org.globalbio…
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Hello there,
I encountered this when trying the workflow:
> nextflow run Arcadia-Science/prehgt -r v1.0.0 -profile conda --outdir fructi --input fructilactobacillus.tsv --blast_db inputs/nr_rep…
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The reports API should acccept a set of parameters to generate reports with dynamic configuration.
The API should accept a set of parameters to define
1. the elements to be included (rows in the r…
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**Sesamum alatum Thonn.**
Forthcoming: Systematics and evolution in Sesamum L. sensu lato (Pedaliaceae), part 2: The genus Sesamopteris (Endl.) Meisn., with two new species. Webbia: Journal of Plant …