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**1. What were you trying to do?**
1. I build a 3 genome pangenome using the singularity container and the --chop switch. The 3 genomes are reference + A + B
I generate a large number of sim…
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Hello, I made a post asking about this on [biostars](https://www.biostars.org/p/9584408/#9584833) when I thought the error was more innocuous than it actually is.
**1. What were you trying to do?*…
cwatt updated
7 months ago
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**1. What were you trying to do?**
I try to mapping my simmulated reads set to graph pangenome using vg giraffe.
**2. What did you want to happen?**
I want to use 20 threads.
**3. What act…
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Hello,
I successfully run the `cactus-pangenome` command on my own personal computer. However, when I run this on our university LSF system (IBM Spectrum LSF 10.1.0.0 build 600488, binary type linux2…
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Dear authors:
Congratulations on publishing an excellent pan genomic work! We are currently using MC to construct the pan genome, but we are not very clear on how to use the pan genome to obtain non …
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Good morning,
I've generated a cactus pangenome graph described in issue #3550. The workflow is the latest version, and uses vg v1.37.0.
I'm now trying to genotype the samples using vg (v1.38.0) wit…
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Dear developers,
I am trying to create a draft pangenome of the 6 yeasts used for the example (S288C, Y12, YPS128, UWOPS034614, SK1 and DBVPG6044) + a very fragmented assembly (BY4741).
My end go…
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Would you mind telling me how to achieve generate a horizontal piece of base sequence like you? And most importantly, how did you generate horizontal base sequences for these segments and nodes and c…
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I was going to try to build the cactus-pangenome bin file according to the tutorial https://github.com/ComparativeGenomicsToolkit/cactus/blob/master/README.md#installing-manually-from-source, but ther…
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Does this support GFA with genomes represented as Path records (as in vg and pggb)?