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hey @fbartusch, Another question for you! I've created some cloud builders that can be launched to run snakemake on Google Cloud (compute) and I tested the valgrind (memory) analysis across about 16 …
vsoch updated
6 years ago
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I attempted to reproduce your data, but encountered the following error. Could you please assist me in resolving this issue?
[Wed Oct 9 04:38:59 2024]
Error in rule refine:
jobid: 447
inp…
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Snakemake handles the creation of log and benchmarking files.
Currently, I have the workflow storing these log and benchmark files as follows:
```python
log:
mash_dir + "logs/mash…
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Github uses linguist to categorize programming languages.
It would be great if snakemake was supported. Yes, it's a superset of Python, so may be classified as Python. But it really _isn't_ valid P…
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I tried to install viper_python2 using the given commands.
Normal viper environment was installed correctly using both miniconda3 or Anaconda3 but python2 based viper environment did not succeed.
…
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Snakemake should be Pathlib compatible across the board now, so it should be possible to remove all the superfluous str conversions in all rules.
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Hello,
Thank you for providing miniprot-boundary-scorer to the community, the tool is really nice.
We wish to include it in our snakemake pipeline. Having to compile a software means that we need t…
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HELLO
i get this error while installing vamb acc. to snakemake workflow
/root/miniconda3/envs/vamb/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes …
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Hello :)
I have a question regarding viral-ngs and its capabilities for detecting virus integration and outputting the results to a text file. I tried to understand the explanation provided in the …
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We should think about how to provide credit to the original pathway reconstruction algorithm authors if their methods are run using our workflow and Docker images. One idea would be to include citati…