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biocore
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oecophylla
shotgun pipeline
MIT License
11
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Updating tool_params.yml
#166
adswafford
closed
5 years ago
0
Update oecophylla-centrifuge.yaml
#165
mikemhenry
closed
5 years ago
0
Added catch to handle common file format
#164
adswafford
closed
5 years ago
0
Set snakemake dependency to v4.8.1
#163
adswafford
closed
6 years ago
0
updated humann2 install with explicit glpk version
#162
tanaes
closed
6 years ago
1
Providing sample sheet with *only* numeric ids doesn't yield any samples
#161
tanaes
opened
6 years ago
0
Shogun version update
#160
tanaes
closed
6 years ago
4
updated envs files for clusters
#159
tanaes
closed
6 years ago
0
update envs in cluster_configs
#158
tanaes
opened
6 years ago
0
updated centrifuge conda
#157
tanaes
closed
6 years ago
0
updated temp dir specifications in a few rules
#156
tanaes
closed
5 years ago
0
sourmash version error
#155
tkosciol
opened
6 years ago
0
taxonomy module won't install
#154
tkosciol
opened
6 years ago
0
Add Anvi'o module
#153
tanaes
closed
6 years ago
0
Added binning module
#152
tanaes
closed
6 years ago
2
added mapping rule
#151
tanaes
closed
6 years ago
0
updated module installs
#150
tanaes
closed
6 years ago
1
updated documentation
#149
tanaes
closed
6 years ago
0
typo
#148
mortonjt
closed
6 years ago
0
removed metaquast from default assembly workflow
#147
tanaes
closed
6 years ago
1
updated kraken install
#146
tanaes
closed
6 years ago
0
Change raw_combine_files to local rule
#145
tanaes
opened
6 years ago
0
Documentation improvements
#144
tanaes
opened
6 years ago
0
Launch fixes
#143
tanaes
closed
6 years ago
0
Documentation
#142
tanaes
closed
6 years ago
0
converted documentation to rst to enable readthedocs integration
#141
tanaes
closed
6 years ago
0
cluster_logs must be created manually in profile mode
#140
tanaes
opened
6 years ago
0
Merging dev into master
#139
tanaes
closed
6 years ago
0
When providing --profile in cluster profile errors without redundant cluster.json
#138
tanaes
closed
6 years ago
0
Update install
#137
tanaes
closed
6 years ago
0
Combine configs
#136
tanaes
closed
6 years ago
0
Fix parse duplicates
#135
tanaes
closed
6 years ago
1
Improve error message for missing config file
#134
tanaes
closed
6 years ago
0
Samples with multiple lines on sample sheets leading to duplicate input?
#133
tanaes
opened
6 years ago
0
"Run QC with Oecophylla" Write-Up
#132
stephanieorch
closed
6 years ago
0
Cleanup log names
#131
tanaes
closed
6 years ago
1
Added local execution for raw_combine_files
#130
tanaes
closed
6 years ago
0
Fix parse input
#129
tanaes
closed
6 years ago
0
fixed resource request bug in launch scripts
#128
tanaes
closed
6 years ago
0
Comet
#127
tanaes
closed
6 years ago
2
Comet
#126
tanaes
closed
6 years ago
1
fix sourmash typo
#125
tanaes
closed
6 years ago
0
updated Centrifuge and others
#124
qiyunzhu
closed
6 years ago
1
SHOGUN binary file name update
#123
qiyunzhu
opened
6 years ago
0
detach Bracken from Centrifuge
#122
qiyunzhu
closed
6 years ago
1
update Kraken to 1.0
#121
qiyunzhu
closed
6 years ago
1
Some small fixes
#120
tanaes
closed
6 years ago
4
Fix tests
#119
tanaes
closed
6 years ago
2
Metaphlan map
#118
sjanssen2
closed
6 years ago
7
Barnacle instructions
#117
tanaes
closed
6 years ago
1
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