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Hi.
I am trying to use the CabanaMD/n2p2 interface for my ML MD simulations. The interface works for the nnp example well, but when I tried it for my system, it's turned out that it doesn't support s…
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I am running a molecular dynamics simulation of a single polymer chain in water. I want to calculate the solvent accessible surface area of the polymer over the course of the simulation.
Per the e…
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## Problem description
The simulation does not enter realtime mode when requested.
## Steps to reproduce
Do the following:
~~~
$ gridlabd model get IEEE/123
$ gridlabd -D run_realtime=1 …
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```
What steps will reproduce the problem?
1. herein after two configuration files to see the difference. My home altitude
is 120 m
2.
3.
What is the expected output? What do you see instead?
in the…
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## Level
**MINOR**
## Component
**RUNTIME**
## Environment
* COMPSs version
* [3.2](https://github.com/eflows4hpc/workflow-registry/blob/9b232cf8aa9c6d285a662168eea4ae9fef73a74b/Pillar_II…
kinow updated
8 months ago
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[Hoverfly JUnit Rule](https://github.com/SpectoLabs/hoverfly-java) supports three modes:
- `simulate` - where recorded trafic is used to stub 3rd party service
- `capture` - transparently records tr…
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This is a relatively minor issue, but the name of the residue seems to affect the free energy calculation in unpredictable ways. In example1, all solvent molecules are labeled as `0C9` in the `.yaml` …
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### What happened?
I setup the box example below. Simply a box on top of the ground.
Geometry is modeled as four spheres at the bottom corners of the box.
# Result with Meshcat
Run sim:
`pyth…
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I have been trying to use string method by using 2296 distance restraints on about 334 atoms pairs of atoms in my system. Initially the simulations blew up as soon as string update and reparametrizat…
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https://www.usenix.org/system/files/nsdi19-gu.pdf
开源 simulation https://github.com/SymbioticLab/Tiresias