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will be going out around 9th September please comment with any content you'd like included
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When shrishtee was running RNA_Calling module, at the step of Picard QC, the following error occurs:
```
INFO 2022-08-22 10:59:12 ProcessExecutor [1] "Checking if R is installed"
10:59:12.543 I…
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This is a record of the issues that we have with the updating InterPro2GO pipeline and with implementing Rfam2go and improving IBA pipelines wrt making Protein2GO the source.
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libdeflate now [supports compression level 0](https://github.com/ebiggers/libdeflate/commit/4c92394eaa8769e1d832c7719d4fbe7a94ac3c42); it would be great if libdeflater can be updated to support this a…
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## Steps to reproduce the problem
I've reproduced this with the [Resolwe](http://resolwe.readthedocs.io) project:
```
git clone https://github.com/genialis/resolwe.git
cd resolwe
mkvirtualenv res…
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Currently, I'm keeping the behavior of the `make_targets()` function, which automatically saves a `targets.csv` file in the current working directory. That file contains the targets, as imported. This…
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Data:
An image folder with images for each of the 12 samples
Metadata for each sample to be collected or provided or parsed from
A HTML report file for each sample (the report is generated from th…
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Hello,
**What I have done**
1) Used `ppgb` to build a graph genome with the `-v` parameter to directly use `vg deconstruct` in the pipeline, to generate a .vcf file
2) Used `vcfbub` to avoid…
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```
(aviary-dev3)cl5n007:20220715:~/git/aviary$ aviary --help
......:::::: AVIARY ::::::......
A comprehensive metagenomics bioinformatics pipeline
Metagenom…
wwood updated
2 years ago
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## Describe the bug
input generates a separate invocation for each pair
IRIDA always creates a list:pair with a single pair in the list
## Steps to reproduce the problem
What were you doing whe…