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Hi,
the following optional select is `"--non_directional"` by default. I would expect it is optional and nothing is selected. I tried `expanded="False"` and also to set every option to `selected=Fals…
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**Examiner _#_1**
- [x] p6, section 1.1.4, 3rd paragraph: "varation" should be "variation"
- [x] p6, section 1.1.4, 4th paragraph: it is stated that all cells in an organism have identical genomes. Si…
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Can people tell me which of the programs in pre-methpipe have already been fully imported into methpipe so I can remove them from my repo?
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**Examiner _#_1**
- [x] p76, point 2: it is said that one must use read 1 or read 2 in the region where they overlap. Ideally, one would actually check that they agree, and if not, either use the call…
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Lets go ahead and purchase kits to make libraries using Illumina protocols.
sr320 updated
9 years ago
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We have a checklist for data files. We need a checklist for data documentation for all our datasets. These will be on our site for our datasets, and will be links to other agencies for their datasets.…
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**Examiner _#_1**
- [x] This chapter raises some very important points on the study of correlation in bisulfite sequencing datasets. This includes some fundamental issues with the interpretation of th…
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**Examiner _#_1**
- [x] Section 2.2.2: The M-bias is well explained, and a strategy to avoid this problem is presented. However, it would be useful to examine the effect of filtering by quality or nei…
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My group ran across this while running some TCGA datasets and I was hoping someone might have some deeper insight into what's going on. The files we're working with are (very) large and non-public. Be…
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I have had a look around the Preseq website as I am interested in implementing it as part of our ChIP-Seq workflow, and also to stimulate some discussions with lab members regarding the re-sequencing …