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smithlabcode
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preseq
Software for predicting library complexity and genome coverage in high-throughput sequencing.
https://preseq.readthedocs.io
GNU General Public License v3.0
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Using preseq 3.2.0 with BAM as input
#74
donaldcampbelljr
opened
2 days ago
1
Using gc_extrap on mitochondrial target enrichment data
#73
eugeniosss
opened
5 months ago
3
about to-mr function
#72
SYSUMSD
opened
6 months ago
1
ERROR: max count before zero is less than min required count (4) duplicates removed
#71
colin893
opened
6 months ago
3
No configure file
#70
sbrillo83
opened
8 months ago
1
Errors During make
#69
robin-sto
opened
10 months ago
7
ERROR: max count before zero is less than min required count (4) duplicates removed
#68
liangwx332
opened
10 months ago
0
Question: Does two reads with opposite strand with same mapping location regarded as duplicates?
#67
zztin
opened
1 year ago
1
Best practices with low-input library with high rate of PCR duplicates
#66
jamilla-az
closed
1 year ago
4
What are defects in approximation? What are the disadvantages to using defect mode?
#65
sclamons
opened
1 year ago
1
lc_extrap: Segmentation dump
#64
cn6659
opened
1 year ago
1
preseq lc_extrap
#63
DittmanC
opened
1 year ago
2
c_curve and lc_extrap output format
#62
AndreaMariani-AM
opened
2 years ago
0
ls_extrap: too many defects, negative CI, and causes
#61
iamTad
closed
2 years ago
3
lc_extrap error: saturation
#60
aminakur
opened
2 years ago
1
ERROR: max count before zero is less than min required count (4) duplicates removed
#59
didillysquat
opened
2 years ago
2
to-mr produces unexpected files with garbled reads
#58
vmkalbskopf
opened
2 years ago
0
ERROR: reads unsorted in:
#57
didillysquat
closed
2 years ago
3
Histogram input file 0 counts
#56
isinaltinkaya
closed
2 years ago
4
preseq sample reads is not all from bam?
#55
jiangfuqing
closed
2 years ago
0
`cmath` error on mac OS v11.3.1
#54
BioTechTimy
closed
3 years ago
4
cannot install with htslib support
#53
lidaof
closed
3 years ago
3
Build fails due to missing size_t definition
#52
knowah
closed
3 years ago
6
Duplication and gc_extrap
#51
nickp60
opened
3 years ago
2
Malformed file from `to-mr`
#50
nickp60
opened
3 years ago
6
Estimating the curve with low read count
#49
JeffreyMaurer
closed
2 years ago
2
Cannot compile 3.1.0 with --enable-hts
#48
birnbera
closed
3 years ago
4
merge changes
#47
terencewtli
closed
4 years ago
0
Redundancy in setting up RNG
#46
terencewtli
closed
1 year ago
2
Cannot compile preseq 3.0.2 or 3.0.1 on Linux environment
#45
TomKellyGenetics
closed
4 years ago
3
`gc_extrap` lower confidence interval giving negative number
#44
terencewtli
closed
4 years ago
1
Installing preseq on a cluster
#43
hugokitano
closed
4 years ago
2
Remove RNG.cpp dependency
#42
amalthomas111
closed
4 years ago
1
Not able to compile preseq (master)
#41
CynAro
closed
4 years ago
2
Make All command
#40
CynAro
closed
4 years ago
0
Question on lc_extrap input
#39
stevenlockton-progenity
closed
5 years ago
1
Fixed compilation errors
#37
nkschaefer
closed
6 years ago
1
Support for fastq? [Feature Request]
#36
MatthewRalston
closed
6 years ago
2
Release 2.0.3?
#35
dpryan79
closed
6 years ago
1
Add -B for BED input to gc_extrap
#34
nishill
closed
6 years ago
5
Is preseq aware of UMI?
#33
dnaase
closed
6 years ago
4
Unexpected complexity curves
#32
tamaraprieto
closed
6 years ago
9
gc_extrap: marking duplicates and not removing them
#31
tamaraprieto
closed
6 years ago
2
use LDFLAGS to allow inclusion of libraries in non-standard locations
#30
MatthewMah
closed
2 years ago
4
problem with defect mode
#29
timydaley
closed
6 years ago
10
ERROR: Malformed line in SAM format
#28
c-guzman
closed
2 years ago
11
unable to install / use on el capitan mac
#27
proukakis
closed
2 years ago
3
Allow user to specify seed for RNG
#26
jstjohn
closed
2 years ago
10
Unable to compile preseq in OS X El Capitain
#25
kendomaniac
closed
7 years ago
2
Inconsistencies between BAM v. BED
#24
MediciPrime
closed
8 years ago
6
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