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During the upload phase for step 5, I am running into an error with VEP while it attempts to run the file. Below are the steps I took to run the command and the second blurb is where the error shows u…
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E.g. Beacon wants to have an image URL for organizations.
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I've tried running this submit script a few different ways but ultimately run into this error each time. I've even tried to redeploy seqr/elasticsearch and hail but setup is still iffy using the two s…
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In igvR we often create small bed or bedGraph data.frames in R describing features of interest, then display them in igv.js by
- writing the bed or bedGraph data.frame to a temporary file, from …
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Hey there,
I just found this gem, and the other gem Dispersal.jl, after your post on [Discourse](https://discourse.julialang.org/t/how-can-we-create-a-leaner-ecosystem-for-julia/32904/30), and I wa…
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I've executed as the below command.
java -Xms2g -Xmx4g -jar exomiser-cli-11.0.0.jar --help
When executing this command, I got the error message.
17:23:40.472 [main] INFO org.monarchinitiative…
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olegs updated
5 years ago
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Right now everything is written to uncompressed pickle files. At the very least, the pickle files should be compressed. Would be good to use NetCDF as it's a familiar format.
Unfortunately last tim…
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Hi,
We would like to detect loss of heterozygosity of loci on chromosome 6 from whole exome sequencing data of tumor samples. We have already managed to install and try FACETS on one of the samples, …
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## Development Options
1. Extend VG / XG with our new Graph Summarization Concepts
2. Summary is stored in our database, XG still used at nucleotide level
3. Import entire XG graph into our databas…