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from the file.snp generate I get something like this:
CHR | SNP | BP | P | Base | Background | hits
-- | -- | -- | -- | -- | -- | --
9 | rs41272879 | 27524980 | 0.4057 | N | N | Y
9 | rs11689999…
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In running EChO_1.0.sh I received a number of warnings which by the look of it seem to emanate from the R script also being run, I did get a results file with foci at the end of the run however the fo…
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**Submitting author:** @absd@bii.a-star.edu.sg (Wing-Cheong Wong)
**Repository:** https://github.com/bii-absd/tims
**Version:** v2.05
**Editor:** @csoneson
**Reviewer:** @rabdill, @andreysmelter
**Arc…
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In the results of my data analysis, the number of SNPs used in the best score (in PRSice.best) was 770870. I wanted to output these SNPs. However, when I used command --print-snp, it outputted 948481 …
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Dear Shing,
I have tried to apply PRSice adjusting by covariates using the --cov-file option.
As highlighted in the tutorial, I include FID, IID + my covs.
When adjusting only by PCs everything …
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A number of LC, DC and Spanish lessons are missing from the "Topic and lessons you're comfortable teaching" section of the instructor profile. For instance:
* Missing [LC lessons](https://libraryca…
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Inigo,
I am developing sample prep application for mtDNA sequencing that should also be useful for ecDNA discovery. I lyse cells in the sample well of an electrophoresis cassette (SageHLS, Sage Scie…
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Hi — I am interested in maintaining a Python wrapper for your AIList C code. My main interest in maintaining the AIList is to use it as the fundamental overlap data structure in pyranges, but also to …
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Hi Sam,
I am trying to rung PRSice2 using WGS data and our binary files are in .psam format (from PLINK2). could they be used as a imput?
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Hi,
I have a question about the "Loading Genotype info from target" section that appears in the log file.
I am using a GWAS base that has 9733 variants observed in the base file, but several are…