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choishingwan
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PRSice
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
http://prsice.info
GNU General Public License v3.0
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Issue with PRSet Setting Threshold
#365
ciel1021
opened
5 days ago
0
Updates quick_start_prset.md to include PLoS Gen paper
#364
juditperala
opened
1 week ago
0
Error: Invalid .bed file size for yyy_Chr2.QC.bed.
#363
acca1562
opened
3 weeks ago
3
Error: Invalid .bed file size for yyy_Chr2.QC.bed
#362
acca1562
closed
3 weeks ago
0
About the covariate file
#361
acca1562
opened
1 month ago
4
PRSice MAF and Filtering Step Slow
#360
zhanglucas
opened
1 month ago
1
[Suggestions] support for pfile
#359
chenyangjjj
closed
2 months ago
1
Generating polygenic scores without a target data phenotype
#358
JessG1981
opened
2 months ago
1
[support] replicable result on inidvidual level
#357
Shawndockercool
opened
3 months ago
1
Issue with PRSice-v2 output
#356
JessG1981
closed
4 months ago
3
Terminate called after throwing an instance of 'std::runtime_error'
#355
ahasuni
opened
4 months ago
0
Error when inputing bgen files
#354
chenpunk
closed
1 month ago
5
Error: Invalid .bed file size for .bed
#353
zfchen1
opened
6 months ago
4
Error: No valid variant remaining
#352
Shrishtee-kandoi
opened
6 months ago
6
Empty Valid SNP ID
#351
science987
opened
6 months ago
0
Issue with the output files (.summary and .prsice files)
#350
WeiChenPan
closed
6 months ago
1
INFO commands
#349
JihyunKiminGithub
opened
7 months ago
1
Trying to run PRSice on files received by a collaborator but BGEN file is not being opened
#348
varsh19
opened
9 months ago
1
Set-based Clumping
#347
JinhanZhu1
closed
6 months ago
1
how to combine PRS from each chromosomes？
#346
hxckk
closed
6 months ago
15
Reduce time
#345
SoumenMaity922
closed
11 months ago
2
Error can't open base file
#344
youniwerse
closed
11 months ago
2
Unrecognized Option
#343
SoumenMaity922
closed
11 months ago
4
scores
#342
mfazel
closed
11 months ago
1
[BUG]std::runtime_error when clumping
#341
jraikist
opened
11 months ago
1
All the variants are excluded, No valid variants
#340
msarguru
closed
11 months ago
2
PRSet Background file
#339
JinhanZhu1
closed
11 months ago
4
[BUG] `sys/sysctl.h` is deprecated in glibc-2.3.2
#338
espenhgn
opened
1 year ago
2
Issue with covariate-file
#337
LarsOstman
opened
1 year ago
6
Customize Base Dataset
#336
JinhanZhu1
closed
12 months ago
3
[Help Wanted]
#335
paulosaquilayan
opened
1 year ago
0
[BUG]no error but .best and .summary file come out to be NULL data.frame
#334
yc-long
closed
1 year ago
0
Unable to remove duplicated SNP with --extract PRSice.valid
#333
sakuramodokich
closed
1 year ago
1
Issue with plotting: Graphics API version mismatch
#332
sakuramodokich
closed
1 year ago
0
No error but getting no results
#331
sakuramodokich
closed
1 year ago
4
Terminate Runtime Error
#330
michellekee
opened
1 year ago
0
Too many variants with mismatch information
#329
sakuramodokich
closed
1 year ago
0
Too many variants with mismatch information
#328
sakuramodokich
closed
1 year ago
4
No error but getting no plot
#327
zillurbmb51
closed
6 months ago
3
Error: ZSTD compression currently unsupported
#326
sakuramodokich
closed
1 year ago
6
Trying to run PRSice with Age and Sex as covariates but I get the error "ERROR: All samples removed due to missingness in covariates file"
#325
varsh19
closed
1 year ago
2
Why computing the R2 between the trait and the PRS is different from PRSIce results?
#324
Antonio-Nappi
opened
1 year ago
5
How to use PRSice without a p-value (e.g data from PGSCatalog)
#323
frankMusacchia
closed
1 year ago
2
Why PRSice-2 tries to install again './lib'?
#322
Antonio-Nappi
closed
1 year ago
1
Is PRS.R2=Full.R2-Null.R2 correct?
#321
Apprentice2
closed
1 year ago
2
SNPs with extremely low P-value
#320
Apprentice2
closed
1 year ago
2
See here related to support
#319
choishingwan
opened
1 year ago
0
Harmonisation and strand flip by PRSice
#318
jianvhuang
opened
1 year ago
2
Phenotype data
#317
RafaFariasVarona
closed
1 year ago
1
Num_SNP matches snps in .snp file
#316
dorks81
closed
1 year ago
1
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