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choishingwan
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PRSice
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
http://prsice.info
GNU General Public License v3.0
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Is PRS.R2=Full.R2-Null.R2 correct?
#321
Apprentice2
closed
1 year ago
2
SNPs with extremely low P-value
#320
Apprentice2
closed
1 year ago
2
See here related to support
#319
choishingwan
opened
1 year ago
0
Harmonisation and strand flip by PRSice
#318
jianvhuang
opened
1 year ago
2
Phenotype data
#317
RafaFariasVarona
closed
1 year ago
1
Num_SNP matches snps in .snp file
#316
dorks81
closed
1 year ago
1
Error: Invalid chromosome number for SNP
#315
PyunJung-Min
opened
1 year ago
0
it is likely that your base and target data has different encoding for SNPs. You will need to check that.
#314
theclairecamp
closed
1 year ago
1
Standardization of effect sizes
#313
ghost
closed
1 year ago
1
No Control Samples-Error
#312
SamGreen52
opened
1 year ago
0
[BUG] Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
#311
Antonio-Nappi
closed
1 year ago
1
negative statistic observed- how to handle negative effect sizes
#310
Janina24
opened
2 years ago
1
Is a summary statistic file (--base ) indispensable for PRS scoring in PRSice-2 ?
#309
shudanhua
opened
2 years ago
1
[BUG] maf filter
#308
JihyunKiminGithub
opened
2 years ago
1
Conda environment
#307
jcasadogp
closed
1 year ago
1
Fix link in README
#306
JoniColeman
closed
2 years ago
0
Plotting PRSice results
#305
oalavijeh
closed
2 years ago
5
PRSice website is down
#304
theclairecamp
closed
2 years ago
3
can not find the "PRSice_win64.exe"
#303
junjiaoFeng
closed
2 years ago
2
Obtaining PRS from a single individual using PGS Catalog files
#302
aheritas
opened
2 years ago
1
Using Heterozygous only model
#301
ruowangli
opened
2 years ago
1
[BUG]PRS model-fit
#300
JY879013005
opened
2 years ago
1
Retrieve gene names from PRSet output [request]
#299
maff1
opened
2 years ago
1
Error: No vairant remained!
#298
PyunJung-Min
closed
2 years ago
1
[BUG] No phenotype presented - causing issues with or without clumping
#297
DiegoMac17
closed
2 years ago
7
[BUG]Error: No valid variant remaining
#296
MaleehaMaria
closed
2 years ago
2
Error: Cannot open file: 510
#295
theclairecamp
closed
2 years ago
2
Is this overfitting? PRScise-2
#294
samreenzafer
opened
2 years ago
1
Error: Cannot open file: .fam
#293
amymartinsen
closed
2 years ago
0
plink --score
#292
ooozcl
opened
2 years ago
3
print snp
#291
ooozcl
closed
2 years ago
0
How to apply to Discovery dataset
#290
ArashLab
closed
2 years ago
2
PRSice does not run if no phenotype is presented- intentional?
#289
MattCloward
closed
2 years ago
4
[BUG] Duplicated SNP ID when using --chr-id
#288
linoferreira
closed
2 years ago
3
calculating PRS using specific SNPs
#287
PyunJung-Min
closed
2 years ago
2
ERROR: Sample mismatch between bgen and phenotype file
#286
syuxuan
closed
2 years ago
7
Extract the exact snps included in the best model
#285
Fnyasimi
closed
2 years ago
6
[BUG] PRSice would calculate allele frequencies even if --maf is not there
#284
ptn24
closed
2 years ago
1
Obtaining results for pre-specified SNP inclusion thresholds
#283
tpillinger
closed
2 years ago
2
Error: Sample mismatch between bgen and phenotype file!
#282
isabelleazimm
closed
2 years ago
3
PRSice/2.3.5 slow when computing allele frequency from plink file
#281
complexgenome
closed
3 years ago
4
[BUG] related to unknown/sex chromosome?
#280
asthakhatiwada
closed
2 years ago
10
not filtered by --maf and --geno in older version?
#279
lgarvert
closed
2 years ago
2
[BUG] --perm is not performed
#278
JoniColeman
closed
3 years ago
5
[BUG] Liability scale conversion returns full model result, not R2 attributable to PRS
#277
JoniColeman
closed
2 years ago
6
[Suggestions please] Including X chromosome in PRS using PRSice (sex-stratified data)
#276
ettheberge
closed
3 years ago
3
Cannot set permutation times larger than 10,000 in PRSice-2 v2.3.3
#275
clytiaxu
closed
3 years ago
1
[BUG] Execution Halted
#274
mdibiase1
closed
2 years ago
2
Validating pathway scores in independent datasets and p-value threshold
#273
hengi110
closed
2 years ago
2
--chr-id questions
#272
dpelegri
closed
3 years ago
2
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