choishingwan PRSice issues

choishingwan / PRSice

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

http://prsice.info

GNU General Public License v3.0

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issues

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[BUG]Error: No valid variant remaining

#271 joannananana closed 3 years ago
2
Error: A total of 200 duplicated SNP ID detected out of 0 input SNPs!

#270 hs2097 closed 3 years ago
30
Blank PRS column in all_score file when using .bgen target files

#269 LiliGM closed 3 years ago
5
Error: No valid variant remaining

#268 hs2097 closed 3 years ago
2
Reverse quantile plot

#267 giuliapontali closed 3 years ago
8
Error: No vairant remained!

#266 briansherry2001 closed 3 years ago
1
Target data

#265 maki8080 closed 3 years ago
2
Sample mismatch in BGEN files

#264 GiulioCentorame closed 3 years ago
12
Error: No vairant remained! [BUG]

#263 sara-wennersten closed 3 years ago
7
Error in if (pheno.name != "-") { : missing value where TRUE/FALSE needed Calls: process_plot

#262 lovelymaoqin closed 3 years ago
3
Issue with plotting

#261 nscarene closed 3 years ago
12
Using bgen file as the ld reference

#260 hengi110 closed 3 years ago
15
Necessary to include phenotype for all individuals despite using --keep ?

#259 gunns2 closed 3 years ago
2
Confusion with bgen sample file format

#258 RaviBot closed 3 years ago
1
Issue with bgen vs bed

#257 batzler closed 3 years ago
15
[BUG]Error: optparse cannot be load nor install!

#256 forevertl closed 3 years ago
2
Error: No vairant remained! When using --chr-id[BUG]

#255 kalkairis closed 3 years ago
2
p-value on bar plot isn't the same as the one reported in the .prsice file

#254 LindsayMMB closed 3 years ago
1
./PRSice_linux: Permission denied

#253 AndreaG5 closed 3 years ago
3
[BUG]PRSice fails to create bar plot when multiple Binary Traits are passed with column names

#252 webhash closed 3 years ago
1
Adobe Helvetica font doesn't exist - need to edit prsice.r script

#251 LindsayMMB closed 3 years ago
2
Error: Reporter not initialized!

#250 jameskozubek closed 3 years ago
4
Issue with plotting the bar graph

#249 LindsayMMB closed 3 years ago
8
[BUG]

#248 iagojunger closed 3 years ago
2
PRS - Single Sample Testing

#247 sinog closed 3 years ago
2
No phenotype presented Error

#246 lrkbruce closed 3 years ago
6
Error: Cannot read the bgen file

#245 jialiwang1211 closed 3 years ago
3
[Help Wanted] PRS.best and regressions

#244 paulosaquilayan closed 3 years ago
5
[Fix] <sys/sysctl.h> removed in glibc >= 2.32

#243 sudorook closed 3 years ago
7
Execution halted during clumping

#242 hershwin closed 3 years ago
2
How to identify SNPs used in PRS calculation

#241 PyunJung-Min closed 3 years ago
4
Bonferroni correction

#240 TeaByrd closed 4 years ago
2
Apply the PRS trained on a test set

#239 emiled16 closed 4 years ago
5
No phenotype presented

#238 emiled16 closed 4 years ago
1
Update index.md

#237 karatugo closed 3 years ago
1
P-value threshold < 0.0005 are ignored

#236 mvacher closed 4 years ago
4
Calculate PRS at specific threshold

#235 mvacher closed 4 years ago
2
error with --allow-inter

#234 dorks81 closed 4 years ago
7
getting same PRS in spite of various p-value setting

#233 PyunJung-Min closed 3 years ago
9
Flag --num-auto || PRScise 2.3.3 (2020-08-05) linux

#232 complexgenome closed 4 years ago
2
data type: bgen || large number of SNP mismatch and core dump

#231 complexgenome closed 3 years ago
2
question: dosage from bgen file

#230 complexgenome closed 4 years ago
4
question: sex covariate from plink file?

#229 complexgenome closed 4 years ago
4
Is AUC available in PRSice?

#228 Qiaolan closed 4 years ago
5
Error in plotting

#227 jessica-agnewblais closed 4 years ago
8
Error: Invalid .bed file size

#226 Qiaolan closed 4 years ago
3
Possible to calculate PRS in a target set without available phenotype?

#225 oyhel closed 4 years ago
2
Output list of SNPs in optimized model

#224 oyhel closed 4 years ago
2
Viewing quantile specific IIDs

#223 ssharma08 closed 4 years ago
2
[BUG]

#222 isabellaCPR closed 3 years ago
26

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