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From Carlos:
Right now in SmartDots we are using the vocabulary SampleType (https://vocab.ices.dk/?ref=1507) for the user expertise.
Could we add Fecundity and Atresia (in two separate records) to …
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V2 data release
- [ ] data update
- [ ] rename proteomic data
- [ ] script update
- [ ] re-run the analysis
- [ ] date upload to s3
- [ ] add new analysis
cc @jharenza
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In [`293d72c`](https://github.com/Sulstice/Uptime-Medical-Informatics/commit/293d72cca81b5016e204e1671f577b7cb23b5462
), Histology Photo Album (http://www.histology-world.com/photoalbum/thumbnails.php…
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The ingest-ui on DEV made a PUT call against `https://entity-api.dev.hubmapconsortium.org/entities/ce723f30e49cb26c655d24cb822d581f` with the following payload
```
{"lab_dataset_id":"fghfh","conta…
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In [`483796a`](https://github.com/Sulstice/Uptime-Medical-Informatics/commit/483796a8340cc19a4aa518b2490345babc8586f0
), ITK Analysis of Large Histology Datasets (http://www.na-mic.org/Wiki/index.php/…
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Destandardize and map to Cancer modifier:
[grade_SNOMED.csv](https://github.com/OHDSI/OncologyWG/files/13218152/grade_SNOMED.csv)
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Currently NeuroBlueprint mandates the placement of data-type folders (behav, ephys, funcimg) in the session level, and histology in the subject level. We discussed a little on slack about moving histo…
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## Summary
I am trying to manually segment a histology image of size 685x502 (2D), and I cannot segment the entire image. The rightmost portion (i indices 589 and higher) does not remember the segm…
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hello,@SineZHAN .
def get_BreakHis(handler, args_task):
download data from https://www.kaggle.com/datasets/ambarish/breakhis and unzip it in data/BreakHis/
data_dir = './data/BreakHis/BreaKH…
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Hi @j-uranic & @jpuerto-psc , the following changes should be made to this Histology directory schema:
1) `raw\/images\/[^\/]+\.xml` should be merged with `raw\/images\/[^\/]+\.(?:scn|vsi|ndpi|sv…